Comparing WP_009544170.1 NCBI__GCF_000017845.1:WP_009544170.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
38% identity, 88% coverage: 49:465/476 of query aligns to 25:441/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
38% identity, 88% coverage: 49:465/476 of query aligns to 26:442/447 of P9WIU7
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
37% identity, 88% coverage: 49:465/476 of query aligns to 27:439/443 of 5x7mA
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
37% identity, 88% coverage: 49:465/476 of query aligns to 27:439/442 of 5x7nA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
34% identity, 90% coverage: 49:475/476 of query aligns to 16:434/434 of 1twiA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
34% identity, 90% coverage: 49:475/476 of query aligns to 20:438/438 of Q58497
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
34% identity, 90% coverage: 49:475/476 of query aligns to 16:434/434 of 1tufA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
31% identity, 88% coverage: 54:470/476 of query aligns to 4:386/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
31% identity, 88% coverage: 54:470/476 of query aligns to 3:385/385 of 2yxxA
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
33% identity, 89% coverage: 46:471/476 of query aligns to 10:417/418 of 4xg1B
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
29% identity, 87% coverage: 55:466/476 of query aligns to 5:396/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
30% identity, 87% coverage: 55:466/476 of query aligns to 3:388/394 of 3c5qA
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
31% identity, 87% coverage: 53:466/476 of query aligns to 22:417/422 of 6n2aA
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
31% identity, 91% coverage: 40:471/476 of query aligns to 2:392/393 of 4xg1A
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
29% identity, 86% coverage: 53:460/476 of query aligns to 15:409/419 of 1ko0A
1knwA Crystal structure of diaminopimelate decarboxylase
29% identity, 86% coverage: 53:460/476 of query aligns to 15:409/421 of 1knwA
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
29% identity, 86% coverage: 53:460/476 of query aligns to 16:410/420 of P00861
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
26% identity, 89% coverage: 46:468/476 of query aligns to 29:455/461 of 8d5rA
8d88A Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- lysine (see paper)
26% identity, 89% coverage: 46:468/476 of query aligns to 29:457/461 of 8d88A
8d4iA Structure of y430f d-ornithine/d-lysine decarboxylase complex with putrescine (see paper)
26% identity, 89% coverage: 46:468/476 of query aligns to 29:457/462 of 8d4iA
>WP_009544170.1 NCBI__GCF_000017845.1:WP_009544170.1
MIATPTKTPHTGQDYLKIKINATDSTKRSPNQSLLPLTANINAHDHLEIGGCDLQTLVEQ
FGSPLYILDEMTLRTACRQYRDNFQTYYKGESQVIYASKAWSCLAVVGVIARENLGFDVV
SGGELYTTQKALTQLGYSCQEIAKKIYFHGNNKSEAELKEAIKVGCTIIVDNWLELQTLA
QLGNDTPNLTIPILIRLTPGIECHTHEYIRTGHLDSKFGFDPNQLEAVFTYISQQTSLDC
RGLHAHIGSQIFERQPHQDLAGVLVEWLKIGREYGLNLSELNIGGGLGICYTEEDDPPSI
EEWVKAVSEAVMKACQRCEIDLPKLIAEPGRSLIGSACVTAYTVGSRKEIPELRTYIAVD
GGMSDNPRPITYQSLYRVALANRMSAEISETVTIAGKHCESGDIVIKDAQLPQTHPGDIL
VIMGTGAYNYSMASNYNRLPRPAAVMVNQGEANLIVRRETYDDLIRQDCLPQRLLP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory