SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_009545595.1 NCBI__GCF_000017845.1:WP_009545595.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

3slhD 1.70 angstrom resolution structure of 3-phosphoshikimate 1- carboxyvinyltransferase (aroa) from coxiella burnetii in complex with shikimate-3-phosphate and glyphosate
48% identity, 95% coverage: 20:446/451 of query aligns to 7:427/440 of 3slhD

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active site: K23 (= K38), S24 (= S39), D50 (= D65), N95 (= N109), R125 (= R140), D317 (= D335), E345 (= E363), H388 (= H407), R389 (= R408), T415 (≠ I434)
binding glyphosate: K23 (= K38), G97 (= G111), T98 (= T112), R125 (= R140), Q171 (= Q187), D317 (= D335), E345 (= E363), R348 (= R366), H388 (= H407), R389 (= R408)
binding shikimate-3-phosphate: S24 (= S39), R28 (= R43), S169 (= S185), Q171 (= Q187), R196 (= R212), D317 (= D335), K344 (= K362)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S24 (= S39), R28 (= R43), T98 (= T112), Q171 (= Q187), R196 (= R212), D317 (= D335), K344 (= K362)

Q83E11 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
48% identity, 95% coverage: 20:446/451 of query aligns to 5:425/438 of Q83E11

query
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Q83E11

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K21 (= K38) binding phosphoenolpyruvate
S22 (= S39) binding 3-phosphoshikimate
R26 (= R43) binding 3-phosphoshikimate
NSGT 93:96 (= NSGT 109:112) Phosphoenolpyruvate
G95 (= G111) binding phosphoenolpyruvate
T96 (= T112) binding phosphoenolpyruvate
R123 (= R140) binding phosphoenolpyruvate
S167 (= S185) binding 3-phosphoshikimate
A168 (= A186) binding 3-phosphoshikimate
Q169 (= Q187) binding 3-phosphoshikimate; binding phosphoenolpyruvate
D315 (= D335) binding 3-phosphoshikimate
K342 (= K362) binding 3-phosphoshikimate
R346 (= R366) binding phosphoenolpyruvate
R387 (= R408) binding phosphoenolpyruvate

Q9S400 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see paper)
48% identity, 93% coverage: 28:447/451 of query aligns to 10:425/427 of Q9S400

query
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Q9S400

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A

A

K

D

I

I

T

T

E

P

L

T

P

A

D

D

G

G

L

M

E

I

I

I

T

K

G

G

G

K

T

S

P

A

L

L

K

H

A

G

A

A

E

R

V

V

D

N

S

T

Y

F

T

G

D

D

H

H

R

R

I

I

A

G

M

M

S

M

L

T

A

A

I

I

A

A

-

L

L

L

N

V

A

A

K

D

G

G

K

E

T

V

I

E

I

L

N

D

R

R

A

A

E

E

A

A

A

I

A

N

I

T

S

S

Y

Y

P

P

K

S

F

F

V

F

E

D

T

D

L

L

Q

E

Q

S

V

L

C

I

S21 (= S39) binding 3-phosphoshikimate
R25 (= R43) binding 3-phosphoshikimate
S166 (= S185) binding 3-phosphoshikimate
A167 (= A186) binding 3-phosphoshikimate
Q168 (= Q187) binding 3-phosphoshikimate
D312 (= D335) binding 3-phosphoshikimate
K339 (= K362) binding 3-phosphoshikimate

4egrA 2.50 angstrom resolution structure of 3-phosphoshikimate 1- carboxyvinyltransferase (aroa) from coxiella burnetii in complex with phosphoenolpyruvate
48% identity, 95% coverage: 20:446/451 of query aligns to 7:423/434 of 4egrA

query
sites
4egrA

T

T

P

I

P

P

N

S

T

Q

G

G

L

L

S

S

L

-

Q

-

G

G

T

E

L

I

Q

C

I

V

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R

R

A

A

L

V

M

L

L

L

G

A

A

A

I

I

A

A

E

E

G

G

E

Q

T

T

I

Q

I

V

A

D

G

G

L

F

L

L

L

M

G

G

E

A

D
|
D

P

N

R

L

S

A

T

M

A

V

E

S

C

A

F

L

R

Q

A

Q

M

M

G

G

A

A

Q

S

I

I

S

Q

P

V

L

I

N

E

S

D

E

E

K

N

V

I

-

L

T

V

I

V

Q

E

G

G

I

V

G

G

L

M

G

T

K

G

L

L

Q

Q

E

A

P

P

L

P

D

E

V

A

L

L

N

D

A

C

G

G

N
|
N

S

S

G
|
G

T
|
T

T

A

M

I

R

R

L

L

M

L

L

S

G

G

L

L

A

A

S

G

H

Q

P

P

D

F

R

N

L

T

F

V

C

-

V

L

T

T

G

G

D

D

A

S

S

S

L

L

R

Q

S

R

R
|
R

P

P

M

M

S

K

R

R

V

I

I

I

Q

D

P

P

L

L

Q

T

D

L

M

M

G

G

A

A

N

K

I

I

W

D

G

S

R

T

K

G

N

N

N

-

T

-

L

V

A

P

P

P

L

L

A

K

V

I

Q

Y

G

G

K

N

-

P

S

R

L

L

K

T

P

G

I

I

H

H

Y

Y

H

Q

S

L

P

P

I

M

A

A

S

S

A

A

Q

Q

V

V

K

K

S

S

C

C

I

L

L

L

A

A

G

G

L

L

M

Y

T

A

D

R

G

G

K

K

T

T

T

C

V

I

T

T

E

E

P

P

A

A

L

P

S

S

R

R

D

D

H

H

S

T

E

E

R

R

M

L

L

L

Q

K

A

H

F

F

G

H

A

Y

T

T

L

L

D

-

I

-

D

-

S

-

Q

Q

T

K

N

Q

S

S

V

I

T

C

I

V

N

S

G

G

H

G

P

G

K

K

L

L

I

K

G

A

Q

N

T

D

V

I

I

S

V

I

P

P

G

G

D

D

I

I

S

S

S

A

A

A

F

F

W

F

L

I

V

V

A

A

S

T

I

I

V

T

P

P

G

G

S

S

E

A

L

I

L

R

I

L

E

C

N

R

V

V

G

G

I

V

N

N

P

P

T

T

R

R

T

L

G

G

I

V

L

I

E

N

A

L

L

L

E

K

M

M

G

G

A

A

D

D

I

I

T

-

L

-

E

E

N

V

K

T

R

H

I

Y

L

T

T

E

G

K

E

E

P

P

V

T

A

A

D

D

L

I

R

T

V

V

K

R

S

H

C

A

Q

R

L

L

K

K

G

G

C

I

T

D

I

I

G

P

N

D

I

Q

I

V

P

P

R

L

L

T

I

I

D
|
D

E

E

V

F

P

P

I

V

L

L

A

L

V

I

A

A

G

A

I

A

F

V

A

A

T

Q

G

G

K

K

T

T

I

V

I

L

K

R

D

D

A

A

E

E

L

L

R

R

V

V

K

K

E
|
E

S

T

D

D

R
|
R

L

I

A

A

V

A

M

M

A

V

S

D

E

G

L

L

T

Q

K

K

M

L

G

G

A

I

K

A

I

A

T

E

E

S

L

L

P

P

D

D

G

G

L

V

E

I

I

I

T

Q

G

G

T

T

P

-

L

L

K

E

A

G

E

E

V

V

D

N

S

S

Y

Y

T

D

D

D

H
|
H

R
|
R

I

I

A

A

M

M

S

A

L

F

A

A

I

V

A

A

A

G

L

T

N

L

A

A

K

K

G

G

K

P

T

V

I

R

I

I

N

R

R

N

A

C

E

D

A

N

A

V

A

K

I
x
T

S

S

Y

F

P

P

K

N

F

F

V

V

E

E

T

L

L

A

Q

N

Q

E

V

V

active site: K23 (= K38), S24 (= S39), D50 (= D65), N95 (= N109), R125 (= R140), D313 (= D335), E341 (= E363), H384 (= H407), R385 (= R408), T411 (≠ I434)
binding phosphoenolpyruvate: K23 (= K38), G97 (= G111), T98 (= T112), R125 (= R140), D313 (= D335), E341 (= E363), R344 (= R366), R385 (= R408)

1rf6A Structural studies of streptococcus pneumoniae epsp synthase in s3p- glp bound state (see paper)
48% identity, 93% coverage: 28:447/451 of query aligns to 10:425/427 of 1rf6A

query
sites
1rf6A

L

L

Q

H

G

G

T

I

L

I

Q

R

I

V

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

I

M

I

L

F

G

G

A

S

I

L

A

A

E

E

G

G

E

E

T

T

I

K

I

V

A

Y

G

D

L

I

L

L

L

R

G

G

E

E

D
|
D

P

V

R

L

S

S

T

T

A

M

E

Q

C

V

F

F

R

R

A

D

M

L

G

G

A

V

Q

E

I

I

S

E

P

D

L

K

N

D

S

G

E

-

K

V

V

I

T

T

I

V

Q

Q

G

G

I

V

G

G

L

M

G

A

K

G

L

L

Q

K

E

A

P

P

L

Q

D

N

V

A

L

L

N

N

A

M

G

G

N
|
N

S

S

G
|
G

T
|
T

T

S

M

I

R

R

L

L

M

I

L

S

G

G

L

V

L

L

A

A

S

G

H

-

P

A

D

D

R

F

L

E

F

V

C

E

V

M

T

F

G

G

D

D

A
x
D

S

S

L

L

R

S

S

K

R
|
R

P

P

M

M

S

D

R

R

V

V

I

T

Q

L

P

P

L

L

Q

K

D

K

M

M

G

G

A

V

N

S

I

I

W

S

G

G

R

Q

K

T

N

E

N

R

T

D

L

L

A

P

P

P

L

L

A

R

V

L

Q

K

G

G

-

T

K

K

S

N

L

L

K

R

P

P

I

I

H

H

Y

Y

H

E

S

L

P

P

I

I

A

A

S
|
S

A

A

Q
|
Q

V

V

K

K

S

S

C

A

I

L

L

M

L

F

A

A

G

A

L

L

M

Q

T

A

D

K

G

G

K

E

T

S

T

V

V

I

T

I

E

E

P

K

A

E

L

Y

S

T

R
|
R

D

N

H

H

S

T

E

E

R

D

M

M

L

L

Q

Q

A

Q

F

F

G

G

A

G

T

H

L

L

D

S

I

V

D

D

S

G

Q

K

T

-

N

-

S

K

V

I

T

T

I

V

N

Q

G

G

H

P

P

Q

K

K

L

L

I

T

G

G

Q

Q

T

K

V

V

I

V

V

V

P

P

G

G

D

D

I

I

S

S

S

A

A

A

F

F

W

W

L

L

V

V

A

A

A

G

S

L

I

I

V

A

P

P

G

N

S

S

E

R

L

L

L

V

I

L

E

Q

N

N

V

V

G

G

I

I

N

N

P

E

T

T

R

R

T

T

G

G

I

I

L

I

E

D

A

V

L

I

E

R

M

A

M

M

G

G

A

G

D

K

I

L

T

-

L

-

E

-

N

-

K

-

R

E

I

I

L

T

T

E

G

I

E

D

P

P

V

V

A

A

D

K

-

S

-

A

-

T

L

L

R

I

V

V

K

E

S

S

C

S

Q

D

L

L

K

K

G

G

C

T

T

E

I

I

G

C

G

G

N

A

I

L

I

I

P

P

R

R

L

L

I
|
I

D
|
D

E

E

V

L

P

P

I

I

L

I

A

A

V

L

A

L

G

A

I

T

F

Q

A

A

T

Q

G

G

K

V

T

T

I

V

I

I

K

K

D

D

A

A

A

E

E

E

L

L

R

K

V

V

K
|
K

E
|
E

S

T

D

D

R
|
R

L

I

A

Q

V

V

M

V

A

A

S

D

E

A

L

L

T

N

K

S

M

M

G

G

A

A

K

D

I

I

T

T

E

P

L

T

P

A

D

D

G

G

L

M

E

I

I

I

T

K

G

G

G

K

T

S

P

A

L

L

K

H

A

G

A

A

E

R

V

V

D

N

S

T

Y

F

T

G

D

D

H
|
H

R
|
R

I

I

A

G

M

M

S

M

L

T

A

A

I

I

A

A

-

L

L

L

N

V

A

A

K

D

G

G

K

E

T

V

I

E

I

L

N

D

R

R

A

A

E

E

A

A

A

I

A

N

I
x
T

S

S

Y

Y

P

P

K

S

F

F

V

F

E

D

T

D

L

L

Q

E

Q

S

V

L

C

I

active site: K20 (= K38), S21 (= S39), D47 (= D65), N90 (= N109), D115 (≠ A135), R120 (= R140), D312 (= D335), E340 (= E363), H384 (= H407), R385 (= R408), T412 (≠ I434)
binding glyphosate: K20 (= K38), G92 (= G111), T93 (= T112), R120 (= R140), Q168 (= Q187), D312 (= D335), E340 (= E363), R343 (= R366), H384 (= H407), R385 (= R408)
binding shikimate-3-phosphate: S21 (= S39), R25 (= R43), S166 (= S185), Q168 (= Q187), R193 (= R212), I311 (= I334), D312 (= D335), K339 (= K362)

1rf4A Structural studies of streptococcus pneumoniae epsp synthase, tetrahedral intermediate bound state (see paper)
48% identity, 93% coverage: 28:447/451 of query aligns to 10:425/427 of 1rf4A

query
sites
1rf4A

L

L

Q

H

G

G

T

I

L

I

Q

R

I

V

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

I

M

I

L

F

G

G

A

S

I

L

A

A

E

E

G

G

E

E

T

T

I

K

I

V

A

Y

G

D

L

I

L

L

L

R

G

G

E

E

D
|
D

P

V

R

L

S

S

T

T

A

M

E

Q

C

V

F

F

R

R

A

D

M

L

G

G

A

V

Q

E

I

I

S

E

P

D

L

K

N

D

S

G

E

-

K

V

V

I

T

T

I

V

Q

Q

G

G

I

V

G

G

L

M

G

A

K

G

L

L

Q

K

E

A

P

P

L

Q

D

N

V

A

L

L

N

N

A

M

G

G

N
|
N

S

S

G
|
G

T
|
T

T

S

M

I

R

R

L

L

M

I

L

S

G

G

L

V

L

L

A

A

S

G

H

-

P

A

D

D

R

F

L

E

F

V

C

E

V

M

T

F

G

G

D

D

A
x
D

S

S

L

L

R

S

S

K

R
|
R

P

P

M

M

S

D

R

R

V

V

I

T

Q

L

P

P

L

L

Q

K

D

K

M

M

G

G

A

V

N

S

I

I

W

S

G

G

R

Q

K

T

N

E

N

R

T

D

L

L

A

P

P

P

L

L

A

R

V

L

Q

K

G

G

-

T

K

K

S

N

L

L

K

R

P

P

I

I

H

H

Y

Y

H

E

S

L

P

P

I

I

A

A

S
|
S

A
|
A

Q
|
Q

V

V

K

K

S

S

C

A

I

L

L

M

L

F

A

A

G

A

L

L

M

Q

T

A

D

K

G

G

K

E

T

S

T

V

V

I

T

I

E

E

P

K

A

E

L

Y

S

T

R
|
R

D

N

H

H

S

T

E

E

R

D

M

M

L

L

Q

Q

A

Q

F

F

G

G

A

G

T

H

L

L

D

S

I

V

D

D

S

G

Q

K

T

-

N

-

S

K

V

I

T

T

I

V

N

Q

G

G

H

P

P

Q

K

K

L

L

I

T

G

G

Q

Q

T

K

V

V

I

V

V

V

P

P

G

G

D

D

I

I

S

S

S

A

A

A

F

F

W

W

L

L

V

V

A

A

A

G

S

L

I

I

V

A

P

P

G

N

S

S

E

R

L

L

L

V

I

L

E

Q

N

N

V

V

G

G

I

I

N

N

P

E

T

T

R

R

T

T

G

G

I

I

L

I

E

D

A

V

L

I

E

R

M

A

M

M

G

G

A

G

D

K

I

L

T

-

L

-

E

-

N

-

K

-

R

E

I

I

L

T

T

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G

I

E

D

P

P

V

V

A

A

D

K

-

S

-

A

-

T

L

L

R

I

V

V

K

E

S

S

C

S

Q

D

L

L

K

K

G

G

C

T

T

E

I

I

G

C

G

G

N

A

I

L

I

I

P

P

R

R

L

L

I

I

D
|
D

E

E

V

L

P

P

I

I

L

I

A

A

V

L

A

L

G

A

I

T

F

Q

A

A

T

Q

G

G

K

V

T

T

I

V

I

I

K

K

D

D

A

A

A

E

E

E

L

L

R

K

V

V

K
|
K

E
|
E

S

T

D

D

R
|
R

L

I

A

Q

V

V

M

V

A

A

S

D

E

A

L

L

T

N

K

S

M

M

G

G

A

A

K

D

I

I

T

T

E

P

L

T

P

A

D

D

G

G

L

M

E

I

I

I

T

K

G

G

G

K

T

S

P

A

L

L

K

H

A

G

A

A

E

R

V

V

D

N

S

T

Y

F

T

G

D

D

H
|
H

R
|
R

I

I

A

G

M

M

S

M

L

T

A

A

I

I

A

A

-

L

L

L

N

V

A

A

K

D

G

G

K

E

T

V

I

E

I

L

N

D

R

R

A

A

E

E

A

A

A

I

A

N

I
x
T

S

S

Y

Y

P

P

K

S

F

F

V

F

E

D

T

D

L

L

Q

E

Q

S

V

L

C

I

active site: K20 (= K38), S21 (= S39), D47 (= D65), N90 (= N109), D115 (≠ A135), R120 (= R140), D312 (= D335), E340 (= E363), H384 (= H407), R385 (= R408), T412 (≠ I434)
binding (3r,4s,5r)-5-{[(1r)-1-carboxy-2-fluoro-1-(phosphonooxy)ethyl]oxy}-4-hydroxy-3-(phosphonooxy)cyclohex-1-ene-1-carboxylic acid: K20 (= K38), S21 (= S39), R25 (= R43), G92 (= G111), T93 (= T112), R120 (= R140), S166 (= S185), A167 (= A186), Q168 (= Q187), R193 (= R212), D312 (= D335), K339 (= K362), E340 (= E363), R343 (= R366), H384 (= H407), R385 (= R408)

2pqcA Cp4 epsps liganded with (r)-phosphonate tetrahedral reaction intermediate analog (see paper)
46% identity, 92% coverage: 28:443/451 of query aligns to 13:435/445 of 2pqcA

query
sites
2pqcA

L

L

Q

S

G

G

T

T

L

V

Q

R

I

I

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

F

M

M

L

F

G

G

A

G

I

L

A

A

E

S

G

G

E

E

T

T

I

R

I

I

A

T

G

G

L

L

L

E

G

G

E

E

D
|
D

P

V

R

I

S

N

T

T

A

G

E

K

C

A

F

M

R

Q

A

A

M

M

G

G

A

A

Q

R

I

I

S

R

P

K

L

-

N

E

S

G

E

D

K

T

V

W

T

I

I

I

Q

D

G

G

I

V

G

G

L

N

G

G

K

G

L

L

Q

L

E

A

P

P

L

E

D

A

V

P

L

L

N

D

A

F

G

G

N
|
N

S

A

G

A

T
|
T

T

G

M

C

R

R

L

L

M

T

L

M

G

G

L

L

L

V

A

G

S

V

H

Y

P

-

D

D

R

F

L

D

F

S

C

T

V

F

T

I

G

G

D

D

A

A

S

S

L

L

R

T

S

K

R
|
R

P

P

M

M

S

G

R

R

V

V

I

L

Q

N

P

P

L

L

Q

R

D

E

M

M

G

G

A

V

N

Q

I

V

W

K

G

S

R

E

K

D

N

G

N

D

T

R

L

L

A

-

P

P

L

V

A

T

V

L

Q

R

G

G

-

P

K

K

S

T

L

P

K

T

P

P

I

I

H

T

Y

Y

H

R

S

V

P

P

I

M

A

A

S
|
S

A

A

Q
|
Q

V

V

K

K

S

S

C

A

I

V

L

L

A

A

G

G

L

L

M

N

T

T

D

P

G

G

K

I

T

T

V

V

T

I

E

E

P

P

A

I

L

M

S

T

R

R

D

D

H

H

S

T

E

E

R

K

M

M

L

L

Q

Q

A

G

F

F

G

G

A

A

T

N

L

L

D

T

I

V

D

E

S

T

Q

D

T

A

N

D

S

G

V

V

T

R

-

T

-

I

-

R

I

L

N

E

G

G

H

R

P

G

K

K

L

L

I

T

G

G

Q

Q

T

V

V

I

I

D

V

V

P

P

G

G

D

D

I

P

S

S

S

T

A

A

F

F

W

P

L

L

V

V

A

A

S

L

I

L

V

V

P

P

G

G

S

S

E

D

L

V

L

T

I

I

E

L

N

N

V

V

G

L

I

M

N

N

P

P

T

T

R

R

T

T

G

G

I

L

L

I

E

L

A

T

L

L

E

Q

M

E

M

M

G

G

A

A

D

D

I

I

T

E

L

V

E

I

N

N

K

P

R

R

I

L

L

A

T

G

G

G

E

E

P

D

V

V

A

A

D

D

L

L

R

R

V

V

K

R

S

S

C

S

Q

T

L

L

K

K

G

G

C

V

T

T

I

V

G

P

G

E

N

D

I

R

I

A

P

P

R

S

L

M

I

I

D
|
D

E

E

V

Y

P

P

I

I

L

L

A

A

V

V

A

A

G

A

I

A

F

F

A

A

T

E

G

G

K

A

T

T

I

V

I

M

K

N

D

G

A

L

A

E

E

E

L

L

R

R

V

V

K
|
K

E
|
E

S

S

D

D

R
|
R

L

L

A

S

V

A

M

V

A

A

S

N

E

G

L

L

T

K

K

L

M

N

G

G

A

V

K

D

I

C

T

D

E

E

L

G

P

E

D

T

G

S

L

L

E

V

I

V

T

R

G

G

G

R

T

P

P

D

L

G

K

K

-

G

-

L

-

G

-

N

-

A

-

S

A

G

A

A

E

A

V

V

D

A

S

T

Y

H

T

L

D

D

H
|
H

R
|
R

I

I

A

A

M

M

S

S

L

F

A

L

I

V

A

M

A

G

L

L

N

V

A

S

K

E

G

N

K

P

T

V

I

T

I

V

N

D

R

D

A

A

E

T

A

M

A

I

A

A

I
x
T

S

S

Y

F

P

P

K

E

F

F

V

M

E

D

T

L

L

M

active site: K23 (= K38), S24 (= S39), D50 (= D65), N93 (= N109), R123 (= R140), D321 (= D335), E349 (= E363), H399 (= H407), R400 (= R408), T426 (≠ I434)
binding [3r-[3a,4a,5b(r*)]]-5-(1-carboxy-1-phosphonoethoxy)-4-hydroxy-3-(phosphonooxy)-1-cyclohexene-1-carboxylic acid: K23 (= K38), S24 (= S39), R28 (= R43), T96 (= T112), R123 (= R140), S168 (= S185), Q170 (= Q187), D321 (= D335), K348 (= K362), E349 (= E363), R352 (= R366), R400 (= R408)

2pqbA Cp4 epsps liganded with (r)-difluoromethyl tetrahedral intermediate analog (see paper)
46% identity, 92% coverage: 28:443/451 of query aligns to 13:435/445 of 2pqbA

query
sites
2pqbA

L

L

Q

S

G

G

T

T

L

V

Q

R

I

I

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

F

M

M

L

F

G

G

A

G

I

L

A

A

E

S

G

G

E

E

T

T

I

R

I

I

A

T

G

G

L

L

L

E

G

G

E

E

D
|
D

P

V

R

I

S

N

T

T

A

G

E

K

C

A

F

M

R

Q

A

A

M

M

G

G

A

A

Q

R

I

I

S

R

P

K

L

-

N

E

S

G

E

D

K

T

V

W

T

I

I

I

Q

D

G

G

I

V

G

G

L

N

G

G

K

G

L

L

Q

L

E

A

P

P

L

E

D

A

V

P

L

L

N

D

A

F

G

G

N
|
N

S

A

G
x
A

T
|
T

T

G

M

C

R

R

L

L

M

T

L

M

G

G

L

L

L

V

A

G

S

V

H

Y

P

-

D

D

R

F

L

D

F

S

C

T

V

F

T

I

G

G

D

D

A

A

S

S

L

L

R

T

S

K

R
|
R

P

P

M

M

S

G

R

R

V

V

I

L

Q

N

P

P

L

L

Q

R

D

E

M

M

G

G

A

V

N

Q

I

V

W

K

G

S

R

E

K

D

N

G

N

D

T

R

L

L

A

-

P

P

L

V

A

T

V

L

Q

R

G

G

-

P

K

K

S

T

L

P

K

T

P

P

I

I

H

T

Y

Y

H

R

S

V

P

P

I

M

A

A

S
|
S

A

A

Q
|
Q

V

V

K

K

S

S

C

A

I

V

L

L

A

A

G

G

L

L

M

N

T

T

D

P

G

G

K

I

T

T

V

V

T

I

E

E

P

P

A

I

L

M

S

T

R

R

D

D

H

H

S

T

E

E

R

K

M

M

L

L

Q

Q

A

G

F

F

G

G

A

A

T

N

L

L

D

T

I

V

D

E

S

T

Q

D

T

A

N

D

S

G

V

V

T

R

-

T

-

I

-

R

I

L

N

E

G

G

H

R

P

G

K

K

L

L

I

T

G

G

Q

Q

T

V

V

I

I

D

V

V

P

P

G

G

D

D

I

P

S

S

S

T

A

A

F

F

W

P

L

L

V

V

A

A

S

L

I

L

V

V

P

P

G

G

S

S

E

D

L

V

L

T

I

I

E

L

N

N

V

V

G

L

I

M

N

N

P

P

T

T

R

R

T

T

G

G

I

L

L

I

E

L

A

T

L

L

E

Q

M

E

M

M

G

G

A

A

D

D

I

I

T

E

L

V

E

I

N

N

K

P

R

R

I

L

L

A

T

G

G

G

E

E

P

D

V

V

A

A

D

D

L

L

R

R

V

V

K

R

S

S

C

S

Q

T

L

L

K

K

G

G

C

V

T

T

I

V

G

P

G

E

N

D

I

R

I

A

P

P

R

S

L

M

I

I

D
|
D

E

E

V

Y

P

P

I

I

L

L

A

A

V

V

A

A

G

A

I

A

F

F

A

A

T

E

G

G

K

A

T

T

I

V

I

M

K

N

D

G

A

L

A

E

E

E

L

L

R

R

V

V

K
|
K

E
|
E

S

S

D

D

R
|
R

L

L

A

S

V

A

M

V

A

A

S

N

E

G

L

L

T

K

K

L

M

N

G

G

A

V

K

D

I

C

T

D

E

E

L

G

P

E

D

T

G

S

L

L

E

V

I

V

T

R

G

G

G

R

T

P

P

D

L

G

K

K

-

G

-

L

-

G

-

N

-

A

-

S

A

G

A

A

E

A

V

V

D

A

S

T

Y

H

T

L

D

D

H
|
H

R
|
R

I

I

A

A

M

M

S

S

L

F

A

L

I

V

A

M

A

G

L

L

N

V

A

S

K

E

G

N

K

P

T

V

I

T

I

V

N

D

R

D

A

A

E

T

A

M

A

I

A

A

I
x
T

S

S

Y

F

P

P

K

E

F

F

V

M

E

D

T

L

L

M

active site: K23 (= K38), S24 (= S39), D50 (= D65), N93 (= N109), R123 (= R140), D321 (= D335), E349 (= E363), H399 (= H407), R400 (= R408), T426 (≠ I434)
binding (3r,4s,5r)-5-[(1r)-1-carboxy-2,2-difluoro-1-(phosphonooxy)ethoxy]-4-hydroxy-3-(phosphonooxy)cyclohex-1-ene-1-carboxylic acid: K23 (= K38), S24 (= S39), R28 (= R43), A95 (≠ G111), T96 (= T112), R123 (= R140), S168 (= S185), Q170 (= Q187), D321 (= D335), K348 (= K362), E349 (= E363), R352 (= R366), R400 (= R408)

2ggaA Cp4 epsp synthase liganded with s3p and glyphosate (see paper)
46% identity, 92% coverage: 28:443/451 of query aligns to 13:435/445 of 2ggaA

query
sites
2ggaA

L

L

Q

S

G

G

T

T

L

V

Q

R

I

I

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

F

M

M

L

F

G

G

A

G

I

L

A

A

E

S

G

G

E

E

T

T

I

R

I

I

A

T

G

G

L

L

L

E

G

G

E

E

D
|
D

P

V

R

I

S

N

T

T

A

G

E

K

C

A

F

M

R

Q

A

A

M

M

G

G

A

A

Q

R

I

I

S

R

P

K

L

-

N

E

S

G

E

D

K

T

V

W

T

I

I

I

Q

D

G

G

I

V

G

G

L

N

G

G

K

G

L

L

Q

L

E

A

P

P

L

E

D

A

V

P

L

L

N

D

A

F

G

G

N
|
N

S
x
A

G
x
A

T
|
T

T

G

M

C

R

R

L

L

M

T

L

M

G

G

L

L

L

V

A

G

S

V

H

Y

P

-

D

D

R

F

L

D

F

S

C

T

V

F

T

I

G

G

D

D

A

A

S

S

L

L

R

T

S

K

R
|
R

P

P

M

M

S

G

R

R

V

V

I

L

Q

N

P

P

L

L

Q

R

D

E

M

M

G

G

A

V

N

Q

I

V

W

K

G

S

R

E

K

D

N

G

N

D

T

R

L

L

A

-

P

P

L

V

A

T

V

L

Q

R

G

G

-

P

K

K

S

T

L

P

K

T

P

P

I

I

H

T

Y

Y

H

R

S

V

P

P

I

M

A

A

S
|
S

A
|
A

Q
|
Q

V

V

K

K

S

S

C

A

I

V

L

L

A

A

G

G

L

L

M

N

T

T

D

P

G

G

K

I

T

T

V

V

T

I

E

E

P

P

A

I

L

M

S

T

R
|
R

D

D

H

H

S

T

E

E

R

K

M

M

L

L

Q

Q

A

G

F

F

G

G

A

A

T

N

L

L

D

T

I

V

D

E

S

T

Q

D

T

A

N

D

S

G

V

V

T

R

-

T

-

I

-

R

I

L

N

E

G

G

H

R

P

G

K

K

L

L

I

T

G

G

Q

Q

T

V

V

I

I

D

V

V

P

P

G

G

D

D

I

P

S

S

S

T

A

A

F

F

W

P

L

L

V

V

A

A

S

L

I

L

V

V

P

P

G

G

S

S

E

D

L

V

L

T

I

I

E

L

N

N

V

V

G

L

I

M

N

N

P

P

T

T

R

R

T

T

G

G

I

L

L

I

E

L

A

T

L

L

E

Q

M

E

M

M

G

G

A

A

D

D

I

I

T

E

L

V

E

I

N

N

K

P

R

R

I

L

L

A

T

G

G

G

E

E

P

D

V

V

A

A

D

D

L

L

R

R

V

V

K

R

S

S

C

S

Q

T

L

L

K

K

G

G

C

V

T

T

I

V

G

P

G

E

N

D

I

R

I

A

P

P

R

S

L

M

I

I

D
|
D

E

E

V

Y

P

P

I

I

L

L

A

A

V

V

A

A

G

A

I

A

F

F

A

A

T

E

G

G

K

A

T

T

I

V

I

M

K

N

D

G

A

L

A

E

E

E

L

L

R

R

V

V

K
|
K

E
|
E

S

S

D

D

R
|
R

L

L

A

S

V

A

M

V

A

A

S

N

E

G

L

L

T

K

K

L

M

N

G

G

A

V

K

D

I

C

T

D

E

E

L

G

P

E

D

T

G

S

L

L

E

V

I

V

T

R

G

G

G

R

T

P

P

D

L

G

K

K

-

G

-

L

-

G

-

N

-

A

-

S

A

G

A

A

E

A

V

V

D

A

S

T

Y

H

T

L

D

D

H
|
H

R
|
R

I

I

A

A

M

M

S

S

L

F

A

L

I

V

A

M

A

G

L

L

N

V

A

S

K

E

G

N

K

P

T

V

I

T

I

V

N

D

R

D

A

A

E

T

A

M

A

I

A

A

I
x
T

S

S

Y

F

P

P

K

E

F

F

V

M

E

D

T

L

L

M

active site: K23 (= K38), S24 (= S39), D50 (= D65), N93 (= N109), R123 (= R140), D321 (= D335), E349 (= E363), H399 (= H407), R400 (= R408), T426 (≠ I434)
binding glyphosate: K23 (= K38), A94 (≠ S110), A95 (≠ G111), T96 (= T112), R123 (= R140), D321 (= D335), E349 (= E363), R352 (= R366), R400 (= R408)
binding shikimate-3-phosphate: S24 (= S39), R28 (= R43), S168 (= S185), A169 (= A186), Q170 (= Q187), R195 (= R212), D321 (= D335), K348 (= K362)

2gg6A Cp4 epsp synthase liganded with s3p (see paper)
46% identity, 92% coverage: 28:443/451 of query aligns to 13:435/445 of 2gg6A

query
sites
2gg6A

L

L

Q

S

G

G

T

T

L

V

Q

R

I

I

P

P

G

G

D

D

K
|
K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

F

M

M

L

F

G

G

A

G

I

L

A

A

E

S

G

G

E

E

T

T

I

R

I

I

A

T

G

G

L

L

L

E

G

G

E

E

D
|
D

P

V

R

I

S

N

T

T

A

G

E

K

C

A

F

M

R

Q

A

A

M

M

G

G

A

A

Q

R

I

I

S

R

P

K

L

-

N

E

S

G

E

D

K

T

V

W

T

I

I

I

Q

D

G

G

I

V

G

G

L

N

G

G

K

G

L

L

Q

L

E

A

P

P

L

E

D

A

V

P

L

L

N

D

A

F

G

G

N
|
N

S

A

G

A

T
|
T

T

G

M

C

R

R

L

L

M

T

L

M

G

G

L

L

L

V

A

G

S

V

H

Y

P

-

D

D

R

F

L

D

F

S

C

T

V

F

T

I

G

G

D

D

A

A

S

S

L

L

R

T

S

K

R
|
R

P

P

M

M

S

G

R

R

V

V

I

L

Q

N

P

P

L

L

Q

R

D

E

M

M

G

G

A

V

N

Q

I

V

W

K

G

S

R

E

K

D

N

G

N

D

T

R

L

L

A

-

P

P

L

V

A

T

V

L

Q

R

G

G

-

P

K

K

S

T

L

P

K

T

P

P

I

I

H

T

Y

Y

H

R

S

V

P

P

I

M

A

A

S
|
S

A

A

Q
|
Q

V

V

K

K

S

S

C

A

I

V

L

L

A

A

G

G

L

L

M

N

T

T

D

P

G

G

K

I

T

T

V

V

T

I

E

E

P

P

A

I

L

M

S

T

R

R

D

D

H

H

S

T

E

E

R

K

M

M

L

L

Q

Q

A

G

F

F

G

G

A

A

T

N

L

L

D

T

I

V

D

E

S

T

Q

D

T

A

N

D

S

G

V

V

T

R

-

T

-

I

-

R

I

L

N

E

G

G

H

R

P

G

K

K

L

L

I

T

G

G

Q

Q

T

V

V

I

I

D

V

V

P

P

G

G

D

D

I

P

S

S

S

T

A

A

F

F

W

P

L

L

V

V

A

A

S

L

I

L

V

V

P

P

G

G

S

S

E

D

L

V

L

T

I

I

E

L

N

N

V

V

G

L

I

M

N

N

P

P

T

T

R

R

T

T

G

G

I

L

L

I

E

L

A

T

L

L

E

Q

M

E

M

M

G

G

A

A

D

D

I

I

T

E

L

V

E

I

N

N

K

P

R

R

I

L

L

A

T

G

G

G

E

E

P

D

V

V

A

A

D

D

L

L

R

R

V

V

K

R

S

S

C

S

Q

T

L

L

K

K

G

G

C

V

T

T

I

V

G

P

G

E

N

D

I

R

I

A

P

P

R

S

L

M

I

I

D
|
D

E

E

V

Y

P

P

I

I

L

L

A

A

V

V

A

A

G

A

I

A

F

F

A

A

T

E

G

G

K

A

T

T

I

V

I

M

K

N

D

G

A

L

A

E

E

E

L

L

R

R

V

V

K
|
K

E
|
E

S

S

D

D

R

R

L

L

A

S

V

A

M

V

A

A

S

N

E

G

L

L

T

K

K

L

M

N

G

G

A

V

K

D

I

C

T

D

E

E

L

G

P

E

D

T

G

S

L

L

E

V

I

V

T

R

G

G

G

R

T

P

P

D

L

G

K

K

-

G

-

L

-

G

-

N

-

A

-

S

A

G

A

A

E

A

V

V

D

A

S

T

Y

H

T

L

D

D

H
|
H

R
|
R

I

I

A

A

M

M

S

S

L

F

A

L

I

V

A

M

A

G

L

L

N

V

A

S

K

E

G

N

K

P

T

V

I

T

I

V

N

D

R

D

A

A

E

T

A

M

A

I

A

A

I
x
T

S

S

Y

F

P

P

K

E

F

F

V

M

E

D

T

L

L

M

active site: K23 (= K38), S24 (= S39), D50 (= D65), N93 (= N109), R123 (= R140), D321 (= D335), E349 (= E363), H399 (= H407), R400 (= R408), T426 (≠ I434)
binding shikimate-3-phosphate: S24 (= S39), R28 (= R43), T96 (= T112), S168 (= S185), Q170 (= Q187), D321 (= D335), K348 (= K362)

Q9R4E4 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; CP4 EPSP synthase; EC 2.5.1.19 from Agrobacterium sp. (strain CP4) (see paper)
46% identity, 92% coverage: 28:443/451 of query aligns to 18:440/455 of Q9R4E4

query
sites
Q9R4E4

L

L

Q

S

G

G

T

T

L

V

Q

R

I

I

P

P

G

G

D

D

K

K

S
|
S

I

I

S

S

H

H

R
|
R

A

S

L

F

M

M

L

F

G

G

A

G

I

L

A

A

E

S

G

G

E

E

T

T

I

R

I

I

A

T

G

G

L

L

L

E

G

G

E

E

D

D

P

V

R

I

S

N

T

T

A

G

E

K

C

A

F

M

R

Q

A

A

M

M

G

G

A

A

Q

R

I

I

S

R

P

K

L

-

N

E

S

G

E

D

K

T

V

W

T

I

I

I

Q

D

G

G

I

V

G

G

L

N

G

G

K

G

L

L

Q

L

E

A

P

P

L

E

D

A

V

P

L

L

N

D

A

F

G

G

N

N