SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_009546777.1 NCBI__GCF_000017845.1:WP_009546777.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
30% identity, 88% coverage: 7:92/98 of query aligns to 7:92/564 of 3al0C

query
sites
3al0C

V

V

Q

L

K

H

I

L

A

E

H

N

L

L

A

A

R

R

L

L

D

E

I

L

T

S

S

E

E

D

E

Q

E

R

E

E

K

S

F

L

A

M

D

K

Q

D

L

F

S

Q

D

E

I

I

L

L

D

D

Y

Y

F

V

E

E

Q

L

L

L

S

N

E

E

L

V

D

D

T

V

E

E

N

G

V

V

P

E

P

P

T

M

T

Y

R

T

A

P

I

V

E

E

L

D

S

S

N

A

I

K

T

L

R

R

Q

K

D

G

S

D

F

P

E

R

L

F

Y

F

H

E

D

M

R

R

D

D

A

L

L

I

L

K

N

K

E

N

A

F

P

P

N

E

P

E

E

K

G

D

D

G

F

H

F

I

R

K

V

V

P

P

Q

G

I

I

Sites not aligning to the query:

active site: 110, 335
binding o5'-(l-glutamyl-sulfamoyl)-adenosine: 106, 108, 109, 118, 122, 142, 276, 294, 295, 297, 298, 324, 325, 333
binding : 144, 145, 148, 208, 213, 252, 255, 266, 269, 270, 276, 297, 298, 299, 300, 301, 304, 330, 332, 363, 364, 365, 370, 387, 389, 391, 392, 397, 400, 407, 446, 447, 453, 457, 509, 520, 524, 527, 535, 536, 538, 539

Query Sequence

>WP_009546777.1 NCBI__GCF_000017845.1:WP_009546777.1
MLDRQQVQKIAHLARLDITSEEEEKFADQLSDILDYFEQLSELDTENVPPTTRAIELSNI
TRQDSFELYHDRDALLNEAPNPEGDFFRVPQILNTDEE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory