SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_009779238.1 NCBI__GCF_000152985.1:WP_009779238.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P49814 Malate dehydrogenase; Vegetative protein 69; VEG69; EC 1.1.1.37 from Bacillus subtilis (strain 168) (see 2 papers)
44% identity, 99% coverage: 2:306/308 of query aligns to 7:311/312 of P49814

query
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P49814

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S149 (≠ G144) modified: Phosphoserine

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

1guzA Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases (see paper)
44% identity, 99% coverage: 1:306/308 of query aligns to 1:305/305 of 1guzA

query
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1guzA

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active site: D147 (= D148), R150 (= R151), H174 (= H175)
binding nicotinamide-adenine-dinucleotide: G9 (= G9), N10 (≠ A10), V11 (= V11), D32 (= D32), V33 (≠ I33), T76 (= T77), G78 (= G79), L79 (≠ I80), P80 (= P81), I97 (= I98), V117 (= V118), N119 (= N120), M142 (= M143), L146 (= L147), H174 (= H175), P228 (= P229)

7byaA Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) complexed with oxaloacetic acid (oaa) and adenosine 5'- diphosphoribose (apr) (see paper)
45% identity, 99% coverage: 2:307/308 of query aligns to 6:311/311 of 7byaA

query
sites
7byaA

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binding adenosine-5-diphosphoribose: G13 (= G9), F14 (≠ A10), T15 (≠ V11), D35 (= D32), I36 (= I33), T81 (= T77), A82 (≠ S78), G83 (= G79), L122 (≠ V118), N124 (= N120)

7by9A Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) complexed with oxaloacetic acid (oaa) and nicotinamide adenine dinucleotide (NAD) (see paper)
45% identity, 99% coverage: 2:307/308 of query aligns to 6:311/311 of 7by9A

query
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7by9A

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A

S

V

V

K

K

K

N

T

V

N

M

G

R

L

M

L

L

E

E

binding nicotinamide-adenine-dinucleotide: G11 (= G7), G13 (= G9), F14 (≠ A10), T15 (≠ V11), D35 (= D32), I36 (= I33), T81 (= T77), A82 (≠ S78), I102 (= I98), Q105 (≠ D101), V106 (= V102), L122 (≠ V118), N124 (= N120), V126 (≠ M122)
binding oxaloacetate ion: L151 (= L147), R155 (= R151), H179 (= H175), G217 (= G214)

7f8dA Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) g218y mutant (see paper)
45% identity, 99% coverage: 2:307/308 of query aligns to 8:313/313 of 7f8dA

query
sites
7f8dA

K

K

V

I

T

S

V

V

V

I

G

G

A

A

G
|
G

A
x
F

V
x
T

G

G

A

A

S

T

C

T

A

A

E

F

Y

L

I

L

A

A

M

Q

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V

V

D
|
D

I
|
I

K

P

-

Q

-
x
L

E

E

G

N

F

P

A

T

E

K

G

G

K

K

A

A

M

L

D

D

L

M

M

L

Q

E

T

A

A

S

S

P

L

V

N

L

A

G

F

F

D

D

T

A

R

N

I

I

T

I

G

G

T

T

T

S

G

-

D

D

Y
|
Y

S

A

K

D

T

T

A

A

G

D

S

S

D

D

I

I

A

V

V

V

I

I

T
|
T

S
x
A

G
|
G

I

I

P

A

R

R

K

K

P

P

G

G

M

M

T

S

R

R

E

D

E

D

L

L

I

V

G

T

I

T

N

N

A

Q

G

K

I

I

V

M

K

K

D

Q

V

V

S

T

S

K

N

E

L

V

I

V

K

K

H

Y

S

S

P

P

D

N

V

C

T

Y

I

I

I

I

V

V

V
x
L

S
x
T

N
|
N

P

P

M

V

D

D

T

A

M

M

T

T

Y

Y

L

T

V

V

H

F

K

K

T

E

T

S

G

G

L

F

P

P

K

K

N

N

K

R

I

V

I

I

G

G

M
x
Q

G

S

G

G

A

V

L
|
L

D

D

S

T

A

A

R

R

F

F

K

R

Y

T

R

F

L

V

A

A

E

E

A

E

L

L

E

N

C

I

P

S

I

V

S

K

D

D

V

V

D

T

G

G

M

F

V

V

I

L

G

G

G

G

H

H

S

G

D

D

T

D

G

-

M

M

I

V

P

P

L

L

T

V

R

R

L

Y

A

S

T

Y

R

A

N

G

S

G

V

I

L

P

A

L

S

E

E

K

F

L

L

I

A

P

E

K

D

D

R

R

L

L

E

D

Q

A

V

I

M

V

E

E

D

R

T

T

K

R

V

K

G

G

G

G

A

Y

T

E

L

I

T

V

K

N

L

L

L

L

G

G

T

N

-

G

S

S

A

A

W

Y

Y

Y

A

A

P
|
P

G

A

A

A

A

S

V

L

S

V

G

E

L

M

V

V

Q

E

A

A

I

I

A

L

C

K

D

D

Q

Q

K

R

K

R

M

I

F

L

P

P

C

A

S

I

A

A

L

Y

L

L

E

E

G

G

E

E

Y

Y

D

G

L

Y

D

E

D

G

I

I

C

Y

I

L

G

G

V

V

P

P

V

T

I

I

L

L

G

G

K

G

D

N

G

G

I

I

E

E

K

K

I

V

V

I

P

E

V

L

D

E

L

L

S

T

D

E

A

E

E

E

K

K

A

A

K

A

L

L

Q

A

E

K

S

S

A

V

A

E

A

S

V

V

K

K

K

N

T

V

N

M

G

R

L

M

L

L

E

E

binding nicotinamide-adenine-dinucleotide: G15 (= G9), F16 (≠ A10), T17 (≠ V11), D37 (= D32), I38 (= I33), L41 (vs. gap), Y71 (= Y65), T83 (= T77), A84 (≠ S78), G85 (= G79), L124 (≠ V118), T125 (≠ S119), N126 (= N120), Q149 (≠ M143), L153 (= L147), P235 (= P229)

P80039 Malate dehydrogenase; EC 1.1.1.37 from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum) (see paper)
42% identity, 100% coverage: 1:307/308 of query aligns to 1:306/310 of P80039

query
sites
P80039

M

M

K

K

V

I

T

T

V

V

V

I

G
|
G

A
|
A

G
|
G

A
x
N

V
|
V

G
|
G

A

A

S

T

C

T

A

A

E

F

Y

R

I

L

A

A

M

E

K

K

N

Q

F

L

A

A

S

R

D

E

V

L

I

V

L

L

V

L

D
|
D

I

V

K

V

E

E

G

G

F

I

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

M

M

Y

Q

E

T

S

A

G

S

P

L

V

N

G

A

L

F

F

D

D

T

T

R

K

I

V

T

T

G

G

T

S

T

N

G

-

D

D

Y

Y

S

A

K

D

T

T

A

A

G

N

S

S

D

D

I

I

A

V

V

V

I

I

T

T

S

A

G

G

I

L

P

P

R

R

K

K

P

P

G

G

M

M

T

T

R

R

E

E

E

D

L

L

I

L

G

S

I

M

N
|
N

A

A

G

G

I

I

V

V

K

R

D

E

V

V

S

T

S

G

N

R

L

I

I

M

K

E

H

H

S

S

P

K

D

N

V

P

T

I

I

I

I

V

V

V

V
|
V

S
|
S

N
|
N

P

P

M

L

D

D

T

I

M

M

T

T

Y

H

L

V

V

A

H

W

K

Q

T

K

T

S

G

G

L

L

P

P

K

K

N

E

K

R

I

V

I

I

G

G

M

M

G

A

G

G

A

V

L

L

D

D

S

S

A

A

R

R

F

F

K

R

Y

S

R

F

L

I

A

A

E

M

A

E

L

L

E

G

C

V

P

S

I

M

S

Q

D

D

V

V

D

T

G

A

M

C

V

V

I

L

G

G

G

G

H

H

S

G

D

D

T

-

G

A

M

M

I

V

P

P

L

V

T

V

R

K

L

Y

A

T

T

T

R

V

N

A

S

G

V

I

L

P

A

V

S

A

E

D

F

L

L

I

A

S

E

A

D

E

R

R

L

I

E

A

Q

E

V

L

M

V

E

E

D

R

T

T

K

R

V

T

G

G

G

G

A

A

T

E

L

I

T

V

K

N

L

H

L

L

G

K

T

Q

-

G

S

S

A

A

W

F

Y

Y

A

A

P

P

G

A

A

T

A

S

V

V

S

V

G

E

L

M

V

V

Q

E

A

S

I

I

A

V

C

L

D

D

Q

R

K

K

K

R

M

V

F

L

P

T

C

C

S

A

A

V

L

S

L

L

E

D

G

G

E

Q

Y

Y

D

G

L

I

D

D

D

G

I

T

C

F

I

V

G

G

V

V

P

P

V

V

I

K

L

L

G

G

K

K

D

N

G

G

I

V

E

E

K

H

I

I

V

Y

P

E

V

I

D

K

L

L

S

D

D

Q

A

S

E

D

K

L

A

D

K

L

L

L

Q

Q

E

K

S

S

A

A

A

K

A

I

V

V

K

D

K

E

T

N

N

C

G

K

L

M

L

L

E

D

GAGNVG 7:12 (≠ GAGAVG 7:12) binding NAD(+)
D32 (= D32) binding NAD(+)
N94 (= N95) binding NAD(+)
VSN 117:119 (= VSN 118:120) binding NAD(+)

4pltB Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate. (see paper)
42% identity, 97% coverage: 2:301/308 of query aligns to 5:312/319 of 4pltB

query
sites
4pltB

K

K

V

I

T

S

V

L

V

I

G

G

A

A

G
|
G

A
x
N

V
x
I

G

G

A

G

S

T

C

L

A

A

E

H

Y

L

I

I

A

A

M

Q

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V
x
F

D
|
D

I
|
I

K

V

E

E

G

G

F

M

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

I

M

S

Q

H

T

S

A

S

S

P

L

I

N

M

A

G

F

S

D

N

T

V

R

K

I

I

T

T

G

G

T

T

T

N

G

-

D

N

Y

Y

S

E

K

D

T

I

A

K

G

G

S

S

D

D

I

V

A

V

V

I

I

I

T
|
T

S
x
A

G
|
G

I
|
I

P
|
P

R

R

K

K

P

P

G

G

-

K

-

S

-

D

-

K

-

E

M

W

T

S

R
|
R

E

D

E

D

L

L

I

L

G

S

I

V

N

N

A

A

G

K

I
|
I

V

M

K

K

D

D

V

V

S

A

S

E

N

N

L

I

I

K

K

K

H

Y

S

C

P

P

D

N

V

A

T

F

I

V

I

I

V

V

V
|
V

S

T

N
|
N

P

P

M

L

D

D

T

V

M

M

T

V

Y

Y

L

V

V

L

H

H

K

K

T

Y

T

S

G

G

L

L

P

P

K

H

N

N

K

K

I

V

I

C

G

G

M
|
M

G

A

G

G

A

V

L

L

D
|
D

S

S

A

S

R
|
R

F

F

K

R

Y

Y

R

F

L

L

A

A

E

E

A

K

L

L

E

N

C

V

P

S

I

P

S

N

D

D

V

V

D

Q

G

A

M

M

V

V

I

I

G

G

G

G

H
|
H

S

G

D

D

T

T

G

-

M

M

I

V

P

P

L

L

T

T

R

R

L

Y

A

C

T

T

R

V

N

G

S

G

V

I

L

P

A

L

S

T

E

E

F

F

-

I

-

K

-

Q

-

G

-

W

L

I

A

T

E

Q

D

E

R

E

L

I

E

D

Q

E

V

I

M

V

E

E

D

R

T

T

K

R

V

N

G

A

G

G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

Y

Y

F

A

A

P
|
P

G

A

A

A

A

S

V

A

S

I

G

E

L

M

V

A

Q

E

A

S

I

Y

A

L

C

K

D

D

Q

K

K

K

K

R

M

I

F

L

P

P

C

C

S

S

A

A

L

Y

L

L

E

E

G

G

E

Q

Y

Y

D

G

L

V

D

K

D

D

I

L

C

F

I

V

G

G

V

V

P

P

V

V

I

I

L

I

G

G

K

K

D

N

G

G

I

V

E

E

K

K

I

I

V

I

P

E

V

L

D

E

L

L

S

T

D

E

A

E

E

E

K

Q

A

E

K

M

L

F

Q

D

E

K

S

S

A

V

A

E

A

S

V

V

K

R

K

E

active site: R94 (= R88), D154 (= D148), R157 (= R151), H181 (= H175)
binding 1,4-dihydronicotinamide adenine dinucleotide: G12 (= G9), N13 (≠ A10), I14 (≠ V11), F33 (≠ V31), D34 (= D32), I35 (= I33), T78 (= T77), A79 (≠ S78), G80 (= G79), I81 (= I80), P82 (= P81), I104 (= I98), V124 (= V118), N126 (= N120), M149 (= M143), H181 (= H175), P240 (= P229)

4plyA Crystal structure of ancestral apicomplexan malate dehydrogenase with malate. (see paper)
42% identity, 97% coverage: 2:301/308 of query aligns to 4:311/318 of 4plyA

query
sites
4plyA

K

K

V

I

T

S

V

L

V

I

G

G

A

A

G
|
G

A
x
N

V
x
I

G

G

A

G

S

T

C

L

A

A

E

H

Y

L

I

I

A

A

M

Q

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V

F

D
|
D

I
|
I

K

V

E

E

G

G

F

M

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

I

M

S

Q

H

T

S

A

S

S

P

L

I

N

M

A

G

F

S

D

N

T

V

R

K

I

I

T

T

G

G

T

T

T

N

G

-

D

N

Y
|
Y

S

E

K

D

T

I

A

K

G

G

S

S

D

D

I

V

A

V

V

I

I

I

T
|
T

S
x
A

G
|
G

I
|
I

P
|
P

R

R

K

K

P

P

G

G

-

K

-

S

-

D

-

K

-

E

M
x
W

T

S

R
|
R

E

D

E

D

L

L

I

L

G

S

I

V

N

N

A

A

G

K

I
|
I

V

M

K

K

D

D

V

V

S

A

S

E

N

N

L

I

I

K

K

K

H

Y

S

C

P

P

D

N

V

A

T

F

I

V

I

I

V

V

V
|
V

S

T

N
|
N

P

P

M

L

D

D

T

V

M

M

T

V

Y

Y

L

V

V

L

H

H

K

K

T

Y

T

S

G

G

L

L

P

P

K

H

N

N

K

K

I

V

I

C

G

G

M
|
M

G

A

G

G

A

V

L
|
L

D
|
D

S

S

A

S

R
|
R

F

F

K

R

Y

Y

R

F

L

L

A

A

E

E

A

K

L

L

E

N

C

V

P

S

I

P

S

N

D

D

V

V

D

Q

G

A

M

M

V

V

I

I

G

G

G

G

H
|
H

S

G

D

D

T

T

G

-

M

M

I

V

P

P

L

L

T

T

R

R

L

Y

A

C

T

T

R

V

N

G

S

G

V

I

L

P

A

L

S

T

E

E

F

F

-

I

-

K

-

Q

-

G

-

W

L

I

A

T

E

Q

D

E

R

E

L

I

E

D

Q

E

V

I

M

V

E

E

D

R

T

T

K

R

V

N

G

A

G
|
G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

Y

Y

F

A

A

P
|
P

G

A

A

A

A

S

V

A

S

I

G

E

L

M

V

A

Q

E

A

S

I

Y

A

L

C

K

D

D

Q

K

K

K

K

R

M

I

F

L

P

P

C

C

S

S

A

A

L

Y

L

L

E

E

G

G

E

Q

Y

Y

D

G

L

V

D

K

D

D

I

L

C

F

I

V

G

G

V

V

P

P

V

V

I

I

L

I

G

G

K

K

D

N

G

G

I

V

E

E

K

K

I

I

V

I

P

E

V

L

D

E

L

L

S

T

D

E

A

E

E

E

K

Q

A

E

K

M

L

F

Q

D

E

K

S

S

A

V

A

E

A

S

V

V

K

R

K

E

active site: D153 (= D148), R156 (= R151), H180 (= H175)
binding 1,4-dihydronicotinamide adenine dinucleotide: G11 (= G9), N12 (≠ A10), I13 (≠ V11), D33 (= D32), I34 (= I33), Y65 (= Y65), T77 (= T77), A78 (≠ S78), G79 (= G79), I80 (= I80), P81 (= P81), I103 (= I98), V123 (= V118), N125 (= N120), M148 (= M143), L152 (= L147), H180 (= H175), P239 (= P229)
binding pyruvic acid: W91 (≠ M86), R93 (= R88), N125 (= N120), R156 (= R151), H180 (= H175), G223 (= G214)

1uxgA Large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface. (see paper)
46% identity, 98% coverage: 2:302/308 of query aligns to 3:301/308 of 1uxgA

query
sites
1uxgA

K

K

V

I

T

S

V

I

V

I

G

G

A

A

G
|
G

A
x
F

V
|
V

G

G

A

S

S

T

C

T

A

A

E

H

Y

W

I

L

A

A

M

A

K

K

N

E

F

L

A

G

S

-

D

D

V

I

I

V

L

L

V

L

D
|
D

I

I

K

V

E

E

G

G

F

V

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

L

M

Y

Q

E

T

A

A

S

S

P

L

I

N

E

A

G

F

F

D

D

T

V

R

R

I

V

T

T

G

G

T

T

T

N

G

-

D

N

Y

Y

S

A

K

D

T

T

A

A

G

N

S

S

D

D

I

V

A

I

V

V

I

V

T
|
T

S
|
S

G
|
G

I
x
A

P
|
P

R
|
R

K

K

P

P

G

G

M

M

T

S

R
|
R

E

E

E

D

L

L

I

I

G

K

I

V

N

N

A

A

G

D

I

I

V

T

K

R

D

A

V
x
C

S

I

S

S

N

Q

L

A

I

A

K

P

H

L

S

S

P

P

D

N

V

A

T

V

I

I

I

I

V

M

V
|
V

S

N

N
|
N

P

P

M

L

D

D

T

A

M

M

T

T

Y

Y

L

L

V

A

H

A

K

E

T

V

T

S

G

G

L

F

P

P

K

K

N

E

K

R

I

V

I

I

G

G

M
x
Q

G

A

G

G

A

V

L
|
L

D
|
D

S

A

A

A

R
|
R

F

Y

K

R

Y

T

R

F

L

I

A

A

E

M

A

E

L

A

E

G

C

V

P

S

I

V

S

E

D

D

V

V

D

Q

G

A

M

M

V

L

I

M

G

G

G

G

H
|
H

S

G

D

D

T

E

G

-

M

M

I

V

P

P

L

L

T

P

R

R

L

F

A

S

T

T

R

I

N

S

S

G

V

I

L

P

A

V

S

S

E

E

F

F

L

I

A

A

E

P

D

D

R

R

L

L

E

A

Q

Q

V

I

M

V

E

E

D

R

T

T

K

R

V

K

G

G

G
|
G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S
|
S

A

A

W

Y

Y

Y

A

A

P
|
P

G

A

A

A

A

A

V

T

S

A

G

Q

L

M

V

V

Q

E

A

A

I

V

A

L

C

K

D

D

Q

K

K

K

K

R

M

V

F

M

P

P

C

V

S

A

A

A

L

Y

L

L

E

T

G

G

E

Q

Y

Y

D

G

L

L

D

N

D

D

I

I

C

Y

I

F

G

G

V

V

P

P

V

V

I

I

L

L

G

G

K

A

D

G

G

G

I

V

E

E

K

K

I

I

V

L

P

E

V

L

D

P

L

L

S

N

D

E

A

E

E

E

K

M

A

A

K

L

L

L

Q

N

E

A

S

S

A

A

A

K

A

A

V

V

K

R

K

A

T

T

active site: R87 (= R88), D147 (= D148), R150 (= R151), H174 (= H175)
binding fumaric acid: R81 (= R82), R87 (= R88), L146 (= L147), R150 (= R151), H174 (= H175), G212 (= G214), S223 (= S224)
binding nicotinamide-adenine-dinucleotide: G10 (= G9), F11 (≠ A10), V12 (= V11), D32 (= D32), T76 (= T77), S77 (= S78), G78 (= G79), A79 (≠ I80), P80 (= P81), C101 (≠ V102), V117 (= V118), N119 (= N120), Q142 (≠ M143), H174 (= H175), P228 (= P229)

P80040 Malate dehydrogenase; EC 1.1.1.37 from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (see 2 papers)
45% identity, 98% coverage: 2:302/308 of query aligns to 4:302/309 of P80040

query
sites
P80040

K

K

V

I

T

S

V

I

V

I

G
|
G

A
|
A

G
|
G

A
x
F

V
|
V

G
|
G

A

S

S

T

C

T

A

A

E

H

Y

W

I

L

A

A

M

A

K

K

N

E

F

L

A

G

S

-

D

D

V

I

I

V

L

L

V

L

D
|
D

I

F

K

V

E

E

G

G

F

V

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

L

M

Y

Q

E

T

A

A

S

S

P

L

I

N

E

A

G

F

F

D

D

T

V

R

R

I

V

T

T

G

G

T

T

T

N

G

-

D

N

Y

Y

S

A

K

D

T

T

A

A

G

N

S

S

D

D

I

V

A

I

V

V

I

V

T

T

S

S

G

G

I

A

P

P

R

R

K

K

P

P

G

G

M

M

T

S

R

R

E

E

E

D

L

L

I

I

G

K

I

V

N

N

A

A

G

D

I

I

V

T

K

R

D

A

V

C

S

I

S

S

N

Q

L

A

I

A

K

P

H

L

S

S

P

P

D

N

V

A

T

V

I

I

I

I

V

M

V
|
V

S
x
N

N
|
N

P

P

M

L

D

D

T

A

M

M

T

T

Y

Y

L

L

V

A

H

A

K

E

T

V

T

S

G

G

L

F

P

P

K

K

N

E

K

R

I

V

I

I

G

G

M

Q

G

A

G

G

A

V

L

L

D

D

S

A

A

A

R

R

F

Y

K

R

Y

T

R

F

L

I

A

A

E

M

A

E

L

A

E

G

C

V

P

S

I

V

S

E

D

D

V

V

D

Q

G

A

M

M

V

L

I

M

G

G

G

G

H

H

S

G

D

D

T

E

G

-

M

M

I

V

P

P

L

L

T

P

R

R

L

F

A

S

T

T

R

I

N

S

S

G

V

I

L

P

A

V

S

S

E

E

F

F

L

I

A

A

E

P

D

D

R

R

L

L

E

A

Q

Q

V

I

M

V

E

E

D

R

T

T

K

R

V

K

G

G

G

G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

Y

Y

Y

A

A

P

P

G

A

A

A

A

A

V

T

S

A

G

Q

L

M

V

V

Q

E

A

A

I

V

A

L

C

K

D

D

Q

K

K

K

K

R

M

V

F

M

P

P

C

V

S

A

A

A

L

Y

L

L

E

T

G

G

E

Q

Y

Y

D

G

L

L

D

N

D

D

I

I

C

Y

I

F

G

G

V

V

P

P

V

V

I

I

L

L

G

G

K

A

D

G

G

G

I

V

E

E

K

K

I

I

V

L

P

E

V

L

D

P

L

L

S

N

D

E

A

E

E

E

K

M

A

A

K

L

L

L

Q

N

E

A

S

S

A

A

A

K

A

A

V

V

K

R

K

A

T

T

GAGFVG 9:14 (≠ GAGAVG 7:12) binding NAD(+)
D33 (= D32) binding NAD(+)
VNN 118:120 (≠ VSN 118:120) binding NAD(+)

1gv0A Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases (see paper)
41% identity, 99% coverage: 1:306/308 of query aligns to 1:301/301 of 1gv0A

query
sites
1gv0A

M

M

K

K

V

I

T

T

V

V

V

I

G

G

A

A

G
|
G

A
x
N

V
|
V

G

G

A

A

S

T

C

T

A

A

E

F

Y

R

I

L

A

A

M

E

K

K

N

Q

F

L

A

A

S

R

D

E

V

L

I

V

L

L

V

L

D
|
D

I
x
V

K

V

E

E

G

G

F

I

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

M

M

Y

Q

E

T

S

A

G

S

P

L

V

N

G

A

L

F

F

D

D

T

T

R

K

I

V

T

T

G

G

T

S

T

N

G

-

D

D

Y

Y

S

A

K

D

T

T

A

A

G

N

S

S

D

D

I

I

A

V

V

V

I

I

T
|
T

S
x
A

G
|
G

I
x
L

P
|
P

R

R

K

K

P

P

G

G

M

M

T

T

R

-

E

-

E

-

L

-

I

L

G

S

I

M

N

N

A

A

G

G

I

I

V

V

K

R

D

E

V

V

S

T

S

G

N

R

L

I

I

M

K

E

H

H

S

S

P

K

D

N

V

P

T

I

I

I

I

V

V

V

V
|
V

S

S

N
|
N

P

P

M

L

D

D

T

I

M

M

T

T

Y

H

L

V

V

A

H

W

K

Q

T

K

T

S

G

G

L

L

P

P

K

K

N

E

K

R

I

V

I

I

G

G

M
|
M

G

A

G

G

A

V

L

L

D
|
D

S

S

A

A

R
|
R

F

F

K

R

Y

S

R

F

L

I

A

A

E

M

A

E

L

L

E

G

C

V

P

S

I

M

S

Q

D

D

V

V

D

T

G

A

M

C

V

V

I

L

G

G

G

G

H
|
H

S

G

D

D

T

-

G

A

M

M

I

V

P

P

L

V

T

V

R

K

L

Y

A

T

T

T

R

V

N

A

S

G

V

I

L

P

A

V

S

A

E

D

F

L

L

I

A

S

E

A

D

E

R

R

L

I

E

A

Q

E

V

L

M

V

E

E

D

R

T

T

K

R

V

T

G

G

G

G

A

A

T

E

L

I

T

V

K

N

L

H

L

L

G

K

T

Q

-

G

S

S

A

A

W

F

Y

Y

A

S

P
|
P

G

A

A

T

A

S

V

V

S

V

G

E

L

M

V

V

Q

E

A

S

I

I

A

V

C

L

D

D

Q

R

K

K

K

R

M

V

F

L

P

T

C

C

S

A

A

V

L

S

L

L

E

D

G

G

E

Q

Y

Y

D

G

L

I

D

D

D

G

I

T

C

F

I

V

G

G

V

V

P

P

V

V

I

K

L

L

G

G

K

K

D

N

G

G

I

V

E

E

K

H

I

I

V

Y

P

E

V

I

D

K

L

L

S

D

D

Q

A

S

E

D

K

L

A

D

K

L

L

L

Q

Q

E

K

S

S

A

A

A

K

A

I

V

V

K

D

K

E

T

N

N

C

G

K

L

M

L

L

active site: D143 (= D148), R146 (= R151), H170 (= H175)
binding nicotinamide-adenine-dinucleotide: G9 (= G9), N10 (≠ A10), V11 (= V11), D32 (= D32), V33 (≠ I33), T76 (= T77), A77 (≠ S78), G78 (= G79), L79 (≠ I80), P80 (= P81), V113 (= V118), N115 (= N120), M138 (= M143), P224 (= P229)

4rosA Crystal structure of methylobacterium extorquens malate dehydrogenase complexed with oxaloacetate and adenosine-5-diphosphoribose
39% identity, 99% coverage: 2:307/308 of query aligns to 4:309/318 of 4rosA

query
sites
4rosA

K

K

V

I

T

A

V

L

V

I

G

G

A

A

G
|
G

A
x
Q

V
x
I

G

G

A

G

S

T

C

L

A

A

E

H

Y

L

I

A

A

G

M

L

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V

F

D
|
D

I
|
I

K

V

E

D

G

G

F

V

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

I

M

A

Q

E

T

S

A

A

S

P

L

V

N

D

A

G

F

F

D

D

T

A

R

K

I

Y

T

S

G

G

T

A

T

S

G

-

D

D

Y

Y

S

S

K

A

T

I

A

A

G

G

S

A

D

D

I

V

A

V

V

I

I

V

T
|
T

S
x
A

G
|
G

I
x
V

P
|
P

R
|
R

K

K

P

P

G

G

M

M

T

S

R
|
R

E

D

E

D

L

L

I

I

G

G

I

I

N

N

A

L

G

K

I
x
V

V

M

K

E

D

A

V

V

S

G

S

A

N

G

L

I

I

K

K

E

H

H

S

A

P

P

D

D

V

A

T

F

I

V

I

I

V

C

V

I

S
x
T

N
|
N

P

P

M

L

D

D

T

A

M

M

T

V

Y

W

L

A

V

L

H

Q

K

K

T

F

T

S

G

G

L

L

P

P

K

T

N

N

K

K

I

V

I

V

G

G

M

M

G

A

G

G

A

V

L
|
L

D
|
D

S

S

A

A

R
|
R

F

F

K

R

Y

H

R

F

L

L

A

A

E

E

A

E

L

F

E

G

C

V

P

S

I

V

S

E

D

D

V

V

D

T

G

A

M

F

V

V

I

L

G

G

G

G

H
|
H

S

G

D

D

T

D

G

-

M

M

I

V

P

P

L

L

T

T

R

R

L

Y

A

S

T

T

R

V

N

A

S

G

V

V

L

P

A

L

S

T

E

D

F

L

L

V

-

K

-

L

-

G

-

W

-

T

A

T

E

Q

D

E

R

K

L

L

E

D

Q

A

V

M

M

V

E

E

D

R

T

T

K

R

V

K

G

G

G
|
G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

F

Y

Y

A

A

P

P

G

A

A

A

A

S

V

A

S

I

G

A

L

M

V

A

Q

E

A

S

I

Y

A

L

C

R

D

D

Q

K

K

K

K

R

M

V

F

L

P

P

C

C

S

A

A

A

L

Y

L

L

E

D

G

G

E

Q

Y

Y

D

G

L

I

D

D

D

G

I

L

C

Y

I

V

G

G

V

V

P

P

V

V

I

V

L

I

G

G

K

E

D

N

G

G

I

V

E

E

K

R

I

V

V

L

P

E

V

V

D

T

L

F

S

N

D

D

A

D

E

E

K

K

A

A

K

M

L

F

Q

E

E

K

S

S

A

V

A

N

A

S

V

V

K

K

K

-

T

-

N

-

G

G

L

L

L

I

E

E

active site: R88 (= R88), D148 (= D148), R151 (= R151), H175 (= H175)
binding adenosine-5-diphosphoribose: G11 (= G9), Q12 (≠ A10), I13 (≠ V11), D33 (= D32), I34 (= I33), T77 (= T77), A78 (≠ S78), G79 (= G79), V80 (≠ I80), P81 (= P81), V98 (≠ I98), T119 (≠ S119), N120 (= N120)
binding oxaloacetate ion: R82 (= R82), R88 (= R88), N120 (= N120), L147 (= L147), R151 (= R151), H175 (= H175), G218 (= G214)

5ujkA Malate dehydrogenase from methylobacterium extorquens, complexed with NAD (see paper)
39% identity, 99% coverage: 2:307/308 of query aligns to 4:309/315 of 5ujkA

query
sites
5ujkA

K

K

V

I

T

A

V

L

V

I

G

G

A

A

G
|
G

A
x
Q

V
x
I

G

G

A

G

S

T

C

L

A

A

E

H

Y

L

I

A

A

G

M

L

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V

F

D
|
D

I
|
I

K

V

E

D

G

G

F

V

A

P

E

Q

G

G

K

K

A

A

M

L

D

D

L

I

M

A

Q

E

T

S

A

A

S

P

L

V

N

D

A

G

F

F

D

D

T

A

R

K

I

Y

T

S

G

G

T

A

T

S

G

-

D

D

Y

Y

S

S

K

A

T

I

A

A

G

G

S

A

D

D

I

V

A

V

V

I

I

V

T
|
T

S
x
A

G
|
G

I

V

P

P

R

R

K

K

P

P

G

G

M

M

T

S

R
|
R

E

D

E

D

L

L

I

I

G

G

I

I

N

N

A

L

G

K

I
x
V

V

M

K

E

D

A

V

V

S

G

S

A

N

G

L

I

I

K

K

E

H

H

S

A

P

P

D

D

V

A

T

F

I

V

I

I

V

C

V
x
I

S

T

N
|
N

P

P

M

L

D

D

T

A

M

M

T

V

Y

W

L

A

V

L

H

Q

K

K

T

F

T

S

G

G

L

L

P

P

K

T

N

N

K

K

I

V

I

V

G

G

M
|
M

G

A

G

G

A

V

L
|
L

D
|
D

S

S

A

A

R
|
R

F

F

K

R

Y

H

R

F

L

L

A

A

E

E

A

E

L

F

E

G

C

V

P

S

I

V

S

E

D

D

V

V

D

T

G

A

M

F

V

V

I

L

G

G

G

G

H
|
H

S

G

D

D

T

D

G

-

M

M

I

V

P

P

L

L

T

T

R

R

L

Y

A

S

T

T

R

V

N

A

S

G

V

V

L

P

A

L

S

T

E

D

F

L

L

V

-

K

-

L

-

G

-

W

-

T

A

T

E

Q

D

E

R

K

L

L

E

D

Q

A

V

M

M

V

E

E

D

R

T

T

K

R

V

K

G

G

G

G

A

G

T

E

L

I

T

V

K

N

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

F

Y

Y

A

A

P

P

G

A

A

A

A

S

V

A

S

I

G

A

L

M

V

A

Q

E

A

S

I

Y

A

L

C

R

D

D

Q

K

K

K

K

R

M

V

F

L

P

P

C

C

S

A

A

A

L

Y

L

L

E

D

G

G

E

Q

Y

Y

D

G

L

I

D

D

D

G

I

L

C

Y

I

V

G

G

V

V

P

P

V

V

I

V

L

I

G

G

K

E

D

N

G

G

I

V

E

E

K

R

I

V

V

L

P

E

V

V

D

T

L

F

S

N

D

D

A

D

E

E

K

K

A

A

K

M

L

F

Q

E

E

K

S

S

A

V

A

N

A

S

V

V

K

K

K

-

T

-

N

-

G

G

L

L

L

I

E

E

active site: R88 (= R88), D148 (= D148), R151 (= R151), H175 (= H175)
binding nicotinamide-adenine-dinucleotide: G11 (= G9), Q12 (≠ A10), I13 (≠ V11), D33 (= D32), I34 (= I33), T77 (= T77), A78 (≠ S78), G79 (= G79), V98 (≠ I98), I118 (≠ V118), N120 (= N120), M143 (= M143), L147 (= L147), H175 (= H175)

3gvhA Crystal structure of lactate/malate dehydrogenase from brucella melitensis
37% identity, 97% coverage: 2:299/308 of query aligns to 4:304/318 of 3gvhA

query
sites
3gvhA

K

K

V

I

T

A

V

L

V

I

G

G

A

S

G
|
G

A

M

V
x
I

G

G

A

G

S

T

C

L

A

A

E

H

Y

L

I

A

A

G

M

L

K

K

N

E

F

L

A

G

S

-

D

D

V

V

I

V

L

L

V

F

D
|
D

I
|
I

K

A

E

E

G

G

F

T

A

P

E

Q

G

G

K

K

A

G

M

L

D

D

L

I

M

A

Q

E

T

S

A

S

S

P

L

V

N

D

A

G

F

F

D

D

T

A

R

K

I

F

T

T

G

G

T

A

T

N

G

-

D

D

Y

Y

S

A

K

A

T

I

A

E

G

G

S

A

D

D

I

V

A

V

V

I

I

V

T
|
T

S
x
A

G

G

I

V

P

P

R

R

K

K

P

P

G

G

M

M

T

S

R
|
R

E

D

E

D

L

L

I

L

G

G

I

I

N

N

A

L

G

K

I

V

V

M

K

E

D

Q

V

V

S

G

S

A

N

G

L

I

I

K

K

K

H

Y

S

A

P

P

D

E

V

A

T

F

I

V

I

I

V

C

V
x
I

S

T

N
|
N

P

P

M

L

D

D

T

A

M

M

T

V

Y

W

L

A

V

L

H

Q

K

K

T

F

T

S

G

G

L

L

P

P

K

A

N

H

K

K

I

V

I

V

G

G

M
|
M

G

A

G

G

A

V

L
|
L

D
|
D

S

S

A

A

R
|
R

F

F

K

R

Y

Y

R

F

L

L

A

S

E

E

A

E

L

F

E

N

C

V

P

S

I

V

S

E

D

D

V

V

D

T

G

V

M

F

V

V

I

L

G

G

G

G

H
|
H

S

G

D

D

T

S

G

-

M

M

I

V

P

P

L

L

T

A

R

R

L

Y

A

S

T

T

R

V

N

A

S

G

V

I

L

P

A

L

S

P

E

D

F

L

L

V

-

K

-

M

-

G

-

W

-

T

A

S

E

Q

D

D

R

K

L

L

E

D

Q

K

V

I

M

I

E

Q

D

R

T

T

K

R

V

D

G

G

G

G

A

A

T

E

L

I

T

V

K

G

L

L

L

L

G

K

T

T

-

G

S

S

A

A

W

F

Y

Y

A

A

P

P

G

A

A

A

A

S

V

A

S

I

G

Q

L

M

V

A

Q

E

A

S

I

Y

A

L

C

K

D

D

Q

K

K

K

K

R

M

V

F

L

P

P

C

V

S

A

A

A

L

Q

L

L

E

S

G

G

E

Q

Y

Y

D

G

L

V

D

K

D

D

I

M

C

Y

I

V

G

G

V

V

P

P

V

T

I

V

L

I

G

G

K

A

D

N

G

G

I

V

E

E

K

R

I

I

V

I

P

E

V

I

D

D

L

L

S

D

D

K

A

D

E

E

K

K

A

A

K

Q

L

F

Q

D

E

K

S

S

A

V

A

A

A

S

V

V

active site: R88 (= R88), D148 (= D148), R151 (= R151), H175 (= H175)
binding nicotinamide-adenine-dinucleotide: G11 (= G9), I13 (≠ V11), D33 (= D32), I34 (= I33), T77 (= T77), A78 (≠ S78), I118 (≠ V118), N120 (= N120), M143 (= M143), L147 (= L147), H175 (= H175)

4plfB Crystal structure of ancestral apicomplexan lactate dehydrogenase with lactate. (see paper)
37% identity, 97% coverage: 2:301/308 of query aligns to 6:313/330 of 4plfB

query
sites
4plfB

K