SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_010441035.1 NCBI__GCF_000192475.1:WP_010441035.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3dmeA Crystal structure of conserved exported protein from bordetella pertussis. Northeast structural genomics target ber141
25% identity, 51% coverage: 28:243/423 of query aligns to 3:211/366 of 3dmeA

query
sites
3dmeA

V

I

D

D

I

C

A

I

V

V

I
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I

G
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G

G

A

G
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G

Y
x
V

T
x
V

G

G

C

L

S

A

A

I

A

A

L

R

T

A

A

L

A

A

K

A

A

G

G

G

A

H

S

E

V

V

C

L

L

V

L

A

E
|
E

A
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A

H

A

E

E

-

G

I

I

G

G

H

T

G

G

G
x
T

S
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S

G

S

R
|
R

N
|
N

V
x
S

G

E

L
x
V

V

I

N
x
H

A

A

G

G

L

I

W

Y

L

Y

P

P

P

A

D

D

Q

S

I

L

R

K

S

A

H

R

L

L

G

C

Q

V

V

R

P

G

G

K

N

H

R

L

L

L

I

Y

D

E

L

Y

L

C

A

A

-

A

-

R

N

G

A

V

P

P

S

H

E

Q

V

R

F

L

G

G

L

K

I

L

D

I

A

V

H

A

E

T

I

S

A

D

C

A

E

E

P

A

V

S

R

Q

H

L

G

D

T

S

L

I

H

A

C

R

A

R

H

A

S

G

A

A

K

N

G

G

F

V

E

D

D

D

L

L

H

-

T

-

R

-

H

-

S

-

Q

-

L

-

S

-

V

-

S

-

G

-

A

-

P

-

V

-

E

Q

L

H

L

I

D

D

A

G

N

A

T

A

S

A

R

R

K

R

R

L

T

-

G

-

S

E

P

P

A

A

V

L

H

H

-

C

-

T

G

A

A

A

L

L

F

V

D

S

P

P

R

S

A

T

G

G

T

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I

V

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D

P

S

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H

A

A

F

L

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M

V

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A

L

Y

A

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R

G

A

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A

A

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E

D

S

A

D

G

G

A

A

L

Q

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L

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V

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F

D

H

S

T

P
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P

I
x
L

Q

I

S

A

-

G

-

R

L

V

R

R

Q

P

E

E

A

G

G

G

M

F

W

E

V

L

L

D

H

F

G

G

-

G

-

A

E

E

N

P

G

M

T

T

V

L

R

S

A

C

K

R

S

V

I

L

I

I

Q

N

A

A

T
x
A

N

G

A

L

Y

H

H

A

Q

P

G

G

I

L

A

A

binding flavin-adenine dinucleotide: I8 (= I33), G9 (= G34), G11 (= G36), V12 (≠ Y37), V13 (≠ T38), E32 (= E57), A33 (= A58), T41 (≠ G65), S42 (= S66), R44 (= R68), N45 (= N69), S46 (≠ V70), V48 (≠ L72), H50 (≠ N74), P170 (= P206), L171 (≠ I207), A203 (≠ T235)

Sites not aligning to the query:

binding flavin-adenine dinucleotide: 313, 314, 346, 347, 348, 349, 350, 351, 352

Query Sequence

>WP_010441035.1 NCBI__GCF_000192475.1:WP_010441035.1
MPDYDQSLWRQTCGESIKTQKLSGDVTVDIAVIGGGYTGCSAALTAAKAGASVCLLEAHE
IGHGGSGRNVGLVNAGLWLPPDQIRSHLGQVPGNRLIDLLANAPSEVFGLIDAHEIACEP
VRHGTLHCAHSAKGFEDLHTRHSQLSVSGAPVELLDANTSRKRTGSPAVHGALFDPRAGT
IQPLAFVVGLARAAQDAGALIYTDSPIQSLRQEAGMWVLHGENGTVRAKSIIQATNAYHQ
GIADTAPAYVPVYYFQYATAPLSHNLRASILPEGEGCWDTGLIMTSFRLDQEGRFIIGGM
GDLNSVGGFAHKAWVSRKLVVLYPQLADQPLVEGWHGRIAMTSDHIPKIIQIGPNALAAH
GFSGRGIGPGTVFGRLMAESLLNDDPSLLPVPPITEYCESWTGLRRAFFETGAALTHLVK
TRF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory