Comparing WP_010876346.1 NCBI__GCF_000008645.1:WP_010876346.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
2d6fD Crystal structure of glu-tRNA(gln) amidotransferase in the complex with tRNA(gln) (see paper)
97% identity, 87% coverage: 1:538/619 of query aligns to 1:522/522 of 2d6fD
3h0rH Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 45% coverage: 4:279/619 of query aligns to 1:250/410 of 3h0rH
Sites not aligning to the query:
3h0rE Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 45% coverage: 4:279/619 of query aligns to 1:250/410 of 3h0rE
3h0rB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 45% coverage: 4:279/619 of query aligns to 1:250/410 of 3h0rB
3h0lB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
31% identity, 45% coverage: 4:279/619 of query aligns to 1:250/410 of 3h0lB
3al0B Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
28% identity, 41% coverage: 10:261/619 of query aligns to 7:243/482 of 3al0B
Sites not aligning to the query:
3kfuF Crystal structure of the transamidosome (see paper)
23% identity, 41% coverage: 10:260/619 of query aligns to 6:230/447 of 3kfuF
Sites not aligning to the query:
4wj3B Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa (see paper)
27% identity, 42% coverage: 3:261/619 of query aligns to 1:235/456 of 4wj3B
Sites not aligning to the query:
3ip4B The high resolution structure of gatcab (see paper)
26% identity, 32% coverage: 419:619/619 of query aligns to 268:476/482 of 3ip4B
Sites not aligning to the query:
2df4B Structure of tRNA-dependent amidotransferase gatcab complexed with mn2+ (see paper)
23% identity, 38% coverage: 10:245/619 of query aligns to 6:219/399 of 2df4B
2g5iB Structure of tRNA-dependent amidotransferase gatcab complexed with adp-alf4 (see paper)
23% identity, 38% coverage: 10:245/619 of query aligns to 6:219/410 of 2g5iB
Sites not aligning to the query:
>WP_010876346.1 NCBI__GCF_000008645.1:WP_010876346.1
MDWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAF
EEAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQ
VIDGSNTGGFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGDGVVFRLDRLGI
PLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGLGTIRQDLNISIRDGARVEVKGVQ
DLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIISSAESVLA
VKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVRGLRDAVG
ASQGDAVVMVAHERVTAENALREVIRRAEMAIQGVPEETRKALPDGNTQYLRPLPTSSRM
YLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEAL
TEFRVDTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKLLEVGKISKDALRDIVACM
ADEGLAAEDAARKLNLLLLAEDEIESIIQEIVEGNLDMISERGMGAMGPLMGQAMGRLRG
RADGKVVNRILREKIQERL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory