Comparing WP_010877248.1 NCBI__GCF_000008645.1:WP_010877248.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
2pv7B Crystal structure of chorismate mutase / prephenate dehydrogenase (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution (see paper)
34% identity, 49% coverage: 11:229/449 of query aligns to 12:214/280 of 2pv7B
Sites not aligning to the query:
4wjiA Crystal structure of cyclohexadienyl dehydrogenase from sinorhizobium meliloti in complex with NADP and tyrosine
26% identity, 57% coverage: 4:258/449 of query aligns to 5:257/293 of 4wjiA
2f1kA Crystal structure of synechocystis arogenate dehydrogenase (see paper)
24% identity, 49% coverage: 20:237/449 of query aligns to 11:233/279 of 2f1kA
Sites not aligning to the query:
5uyyA Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with l-tyrosine (see paper)
24% identity, 49% coverage: 16:237/449 of query aligns to 16:246/373 of 5uyyA
Sites not aligning to the query:
6u60B Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with NAD and l-tyrosine (see paper)
24% identity, 49% coverage: 16:237/449 of query aligns to 8:238/365 of 6u60B
Sites not aligning to the query:
5t9fB Prephenate dehydrogenase n222d mutant from soybean (see paper)
24% identity, 38% coverage: 14:184/449 of query aligns to 7:181/253 of 5t9fB
Sites not aligning to the query:
8a3xA Imine reductase from ensifer adhaerens in complex with NADP+ (see paper)
27% identity, 57% coverage: 8:261/449 of query aligns to 2:265/295 of 8a3xA
3ggoA Crystal structure of prephenate dehydrogenase from a. Aeolicus with hpp and nadh (see paper)
26% identity, 41% coverage: 13:194/449 of query aligns to 9:202/285 of 3ggoA
Sites not aligning to the query:
3ggpA Crystal structure of prephenate dehydrogenase from a. Aeolicus in complex with hydroxyphenyl propionate and NAD+ (see paper)
26% identity, 41% coverage: 13:194/449 of query aligns to 9:202/286 of 3ggpA
Sites not aligning to the query:
3gggD The crystal structure of a. Aeolicus prephenate dehydrogenase in complex with tyrosine and NAD+ (see paper)
26% identity, 41% coverage: 13:194/449 of query aligns to 17:210/293 of 3gggD
Sites not aligning to the query:
5n2iA F420:nadph oxidoreductase from thermobifida fusca with NADP+ bound (see paper)
29% identity, 35% coverage: 2:160/449 of query aligns to 6:182/225 of 5n2iA
>WP_010877248.1 NCBI__GCF_000008645.1:WP_010877248.1
MDNETVGKMIISIIGGTRELGYWIARFLRKEGFRVIITGRDPDTGRSAAGRIGAKYCRDN
VRAASLADVVVVSVPIEVTSDVLREVAPHVREGGLLMDVTSVKEEPARVMERFIARGAHY
IPAHPMFGPRVSSLEGQVVVLTPSGDNPWLDDVIRFLEERKARVIVTDPSTHDRMMSVVQ
VLTHFAYISIAATLEAEGVDIRESRKFASPIYNLMIDTIARIVAQNPYLAYSIQTHNTYG
QEMRDCFLRTATRLNEMLRDGRMDDFVAGMGLAAKNIDDVEASLGRSDKAIEALNQELIV
LRNSVGQEIGIKHIYSGRVHVGVLESVTPDYAMLRSGKRVMKFKISNIRVLSEEELRRWK
VENLDLRVYDVSAVFSDSVDPEVIAHLIGLLDCVVDVKIVDLYRGPQIPPDHFSLTLRVK
VFDRECYEEILGVSEGYRCLNKVILTLSV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory