Comparing WP_010961291.1 NCBI__GCF_000008325.1:WP_010961291.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3n2oA X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus (see paper)
48% identity, 99% coverage: 8:625/625 of query aligns to 2:630/630 of 3n2oA
3n2oB X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus (see paper)
48% identity, 99% coverage: 8:625/625 of query aligns to 1:629/629 of 3n2oB
3nzqA Crystal structure of biosynthetic arginine decarboxylase adc (spea) from escherichia coli, northeast structural genomics consortium target er600 (see paper)
47% identity, 98% coverage: 14:625/625 of query aligns to 5:624/628 of 3nzqA
Q9SI64 Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
34% identity, 95% coverage: 4:595/625 of query aligns to 32:625/702 of Q9SI64
3nzpB Crystal structure of the biosynthetic arginine decarboxylase spea from campylobacter jejuni, northeast structural genomics consortium target br53 (see paper)
34% identity, 86% coverage: 15:554/625 of query aligns to 4:507/591 of 3nzpB
Sites not aligning to the query:
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
28% identity, 30% coverage: 166:350/625 of query aligns to 104:274/394 of 3c5qA
Sites not aligning to the query:
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
28% identity, 30% coverage: 166:350/625 of query aligns to 106:276/405 of B4XMC6
Sites not aligning to the query:
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
26% identity, 41% coverage: 100:354/625 of query aligns to 60:299/422 of 6n2aA
Sites not aligning to the query:
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
27% identity, 41% coverage: 93:349/625 of query aligns to 59:306/434 of 1tufA
Sites not aligning to the query:
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
27% identity, 41% coverage: 93:349/625 of query aligns to 59:306/434 of 1twiA
Sites not aligning to the query:
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
27% identity, 41% coverage: 93:349/625 of query aligns to 63:310/438 of Q58497
Sites not aligning to the query:
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
28% identity, 42% coverage: 89:349/625 of query aligns to 43:289/418 of 4xg1B
Sites not aligning to the query:
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
27% identity, 38% coverage: 57:292/625 of query aligns to 7:220/385 of 2yxxA
Sites not aligning to the query:
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
27% identity, 38% coverage: 57:292/625 of query aligns to 8:221/386 of Q9X1K5
Sites not aligning to the query:
6knhC Crystal structure of sbnh in complex with citrate, a plp-dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
25% identity, 41% coverage: 100:353/625 of query aligns to 46:276/384 of 6knhC
Sites not aligning to the query:
6kniA Crystal structure of sbnh in complex with the cofactor plp, a plp- dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
25% identity, 41% coverage: 100:353/625 of query aligns to 46:272/381 of 6kniA
Sites not aligning to the query:
6knkA Crystal structure of sbnh in complex with citryl-diaminoethane (see paper)
25% identity, 41% coverage: 100:353/625 of query aligns to 47:274/383 of 6knkA
Sites not aligning to the query:
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
24% identity, 49% coverage: 43:349/625 of query aligns to 22:313/442 of 5x7nA
Sites not aligning to the query:
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
25% identity, 49% coverage: 43:349/625 of query aligns to 22:313/443 of 5x7mA
Sites not aligning to the query:
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
27% identity, 30% coverage: 168:357/625 of query aligns to 134:329/447 of P9WIU7
Sites not aligning to the query:
>WP_010961291.1 NCBI__GCF_000008325.1:WP_010961291.1
MTKANWTLSDARDTYAIEHWSDGYFNIAPEGEVVVCPQRGSVEGGVSIAAIARGVRAEGL
SLPVLMRFPHILHDRVRLLTSAFGKARAAYHYGAGYTPVYPIKVNQQRNVIENILRAGGV
GLEAGSKSELLAILALAESGTIICNGYKDRAYIRLALIGSRLGLRVFIVVEKLSELELVV
SESEALGIAPQLGVRIRLSSISAGKWQNSGGEKSKFGLHAGEILKFLKRLERAGGLGWVR
LMHFHMGSQVANINDVKTALREASRYYAELRRLGAPVDHVDVGGGLGIDYEGTHSVSDCS
INYSVDEYAHSIVRAFSELCAEQGLPQPDLITEAGRAMSAHHAVLVTNVVDIEAATYDAS
PVSASVAQPLKDLEDLLRRVDSESVLGIYHDAEFDLAETRTMYVQGKIGLDQLAEAERLH
ATLCREVQQRLDIRLRAHRAVLDELNERLADKLFCNFSVFQSIPDAWAIDQIFPVMPLQR
LGEEPTRRAVIQDMTCDSDGRINAYIDRQSIENTLRMHAPAPGEPYLIGFFLVGAYQEIL
GDMHNLFGDTHSVDVELDGAGGYTFTHTRRGDGADDLLRYVHIDPDELERSYRKKLIEAD
IPMHQRKQYESELIAGLSNYTYLEE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory