SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_010966449.1 NCBI__GCF_000008765.1:WP_010966449.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 7 hits to proteins with known functional sites (download)

2pkpA Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271) (see paper)
48% identity, 98% coverage: 1:160/163 of query aligns to 1:158/167 of 2pkpA

query
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2pkpA
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Q58667 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
48% identity, 98% coverage: 1:160/163 of query aligns to 1:158/170 of Q58667

query
sites
Q58667
M
 
M
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D
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O14289 3-isopropylmalate dehydratase; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
33% identity, 79% coverage: 13:141/163 of query aligns to 554:698/758 of O14289

query
sites
O14289
N
 
N
I
 
V
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D
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T
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F

Sites not aligning to the query:

P9WK95 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
37% identity, 61% coverage: 13:111/163 of query aligns to 18:119/198 of P9WK95

query
sites
P9WK95
N
 
N
I
 
V
D
 
D
T
 
T
D
 
D
V
 
Q
I
 
I
I
 
I
P
 
P
A
 
A
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V
Y
 
F
L
 
L
-
 
K
-
 
R
-
 
V
-
 
T
N
 
R
T
 
T
S
 
G
V
 
F
P
 
E
E
 
D
E
 
G
L
 
L
A
 
F
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A
H
 
G
C
 
W
M
 
R
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S
D
 
D
L
 
P
D
 
A
-
 
F
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V
D
 
L
F
 
N
L
 
L
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S
K
 
P
L
 
F
K
 
D
T
 
R
G
 
G
D
 
S
I
 
V
V
 
L
V
 
V
G
 
A
G
 
G
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P
N
 
D
F
 
F
G
 
G
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T
G
 
G
S
 
S
S
 
S
R
 
R
E
 
E
H
 
H
A
 
A
P
 
V
I
 
W
C
 
A
I
 
L
K
 
M
A
 
D
A
 
Y
G
 
G
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F
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R
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V
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V
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I
A
 
S
K
 
S
S
 
R
F
 
F
A
 
G
R
 
D
I
 
I
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F
Y
 
R
R
 
G
N
 
N
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A
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G
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K
I
 
A
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G
F
 
-
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-
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L
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L
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A
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A
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E
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V
A
 
A
V
 
Q
N
 
D
D
 
D

Sites not aligning to the query:

P09339 Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis (strain 168) (see 2 papers)
35% identity, 49% coverage: 47:126/163 of query aligns to 774:857/909 of P09339

query
sites
P09339
K
 
K
K
 
E
L
 
D
K
 
K
T
 
T
G
 
G
D
 
L
I
 
V
V
 
V
V
 
L
G
 
A
G
 
G
R
 
K
N
 
D
F
 
Y
G
 
G
C
 
M
G
 
G
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S
S
 
S
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R
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D
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A
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A
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G
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N
A
 
L
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L
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I
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V
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I
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E
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S
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F
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E
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R
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I
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H
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R
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S
N
 
N
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L
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V
N
 
F
I
 
M
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G
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V
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L
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P
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L
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Q
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F
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K
E
 
Q
A
 
G
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E
N
 
N
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A
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D
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T
T
 
L
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G
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L
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E
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V
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D
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E
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V

Sites not aligning to the query:

P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
51% identity, 25% coverage: 54:94/163 of query aligns to 655:695/778 of P19414

query
sites
P19414
I
 
V
V
 
V
V
 
I
G
 
G
G
 
D
R
 
E
N
 
N
F
 
F
G
 
G
C
 
E
G
 
G
S
 
S
S
 
S
R
 
R
E
 
E
H
 
H
A
 
A
P
 
A
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L
C
 
E
I
 
P
K
 
R
A
 
F
A
 
L
G
 
G
V
 
G
S
 
F
C
 
A
V
 
I
I
 
I
A
 
T
K
 
K
S
 
S
F
 
F
A
 
A
R
 
R
I
 
I
F
 
H
Y
 
E
R
 
T
N
 
N

Sites not aligning to the query:

A0QX20 Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
39% identity, 45% coverage: 54:126/163 of query aligns to 811:884/943 of A0QX20

query
sites
A0QX20
I
 
V
V
 
V
V
 
L
G
 
G
G
 
G
R
 
K
N
 
E
F
 
Y
G
 
G
C
 
S
G
 
G
S
 
S
S
 
S
R
 
R
E
 
D
H
 
W
A
 
A
P
 
A
I
 
K
C
 
G
I
 
T
K
 
V
A
 
L
A
 
L
G
 
G
V
 
V
S
 
K
C
 
A
V
 
V
I
 
I
A
 
T
K
 
E
S
 
S
F
 
F
A
 
E
R
 
R
I
 
I
F
 
H
Y
 
R
R
 
S
N
 
N
S
 
L
I
 
I
N
 
G
I
 
M
G
 
G
F
 
V
P
 
I
I
 
P
L
 
L
E
 
Q
C
 
F
E
 
P
E
 
A
A
 
G
V
 
E
N
 
S
D
 
A
A
 
A
S
 
S
T
 
L
G
 
K
-
 
L
D
 
D
K
 
G
L
 
T
E
 
E
V
 
T
D
 
Y
F
 
D
I
 
I
E
 
E
G
 
G
I
 
I

Sites not aligning to the query:

Query Sequence

>WP_010966449.1 NCBI__GCF_000008765.1:WP_010966449.1
MKVNGDVLKYGDNIDTDVIIPARYLNTSVPEELAKHCMEDLDVDFLKKLKTGDIVVGGRN
FGCGSSREHAPICIKAAGVSCVIAKSFARIFYRNSINIGFPILECEEAVNDASTGDKLEV
DFIEGIIKNVTLNKEYKAQPFPDFMLKIMKNEGLTNCVKKGLF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory