Comparing WP_011023914.1 NCBI__GCF_000007345.1:WP_011023914.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
5x40A Structure of a cbio dimer bound with amppcp (see paper)
44% identity, 78% coverage: 44:297/326 of query aligns to 3:256/280 of 5x40A
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
40% identity, 78% coverage: 45:297/326 of query aligns to 1:253/276 of Q5M243
Q5M244 Energy-coupling factor transporter ATP-binding protein EcfA2; ECF transporter A component EcfA2; EC 3.6.3.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
39% identity, 80% coverage: 46:307/326 of query aligns to 3:272/280 of Q5M244
5d3mA Folate ecf transporter: amppnp bound state (see paper)
37% identity, 78% coverage: 45:297/326 of query aligns to 5:259/280 of 5d3mA
8bmpA Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
38% identity, 72% coverage: 62:297/326 of query aligns to 19:256/278 of 8bmpA
Sites not aligning to the query:
8bmsA Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
38% identity, 72% coverage: 63:297/326 of query aligns to 20:256/278 of 8bmsA
Sites not aligning to the query:
8bmpB Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
39% identity, 74% coverage: 58:299/326 of query aligns to 17:262/281 of 8bmpB
Sites not aligning to the query:
5d3mB Folate ecf transporter: amppnp bound state (see paper)
39% identity, 74% coverage: 58:299/326 of query aligns to 17:262/281 of 5d3mB
Sites not aligning to the query:
8bmsB Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
38% identity, 74% coverage: 58:299/326 of query aligns to 17:262/281 of 8bmsB
Sites not aligning to the query:
4hluA Structure of the ecfa-a' heterodimer bound to adp (see paper)
37% identity, 75% coverage: 43:286/326 of query aligns to 3:245/265 of 4hluA
4zirA Crystal structure of ecfaa' heterodimer bound to amppnp (see paper)
36% identity, 75% coverage: 43:286/326 of query aligns to 3:243/263 of 4zirA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 65% coverage: 63:273/326 of query aligns to 21:233/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 65% coverage: 63:273/326 of query aligns to 22:234/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 65% coverage: 63:273/326 of query aligns to 22:234/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 65% coverage: 63:273/326 of query aligns to 22:234/344 of 6cvlD
Sites not aligning to the query:
4hluC Structure of the ecfa-a' heterodimer bound to adp (see paper)
35% identity, 72% coverage: 46:280/326 of query aligns to 5:235/249 of 4hluC
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
39% identity, 69% coverage: 45:268/326 of query aligns to 4:223/285 of 4yerA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
38% identity, 64% coverage: 62:269/326 of query aligns to 16:224/240 of 4ymuJ
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 65% coverage: 65:275/326 of query aligns to 35:242/378 of P69874
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 71% coverage: 44:273/326 of query aligns to 1:228/241 of 4u00A
>WP_011023914.1 NCBI__GCF_000007345.1:WP_011023914.1
MTISTLSSSYGNAQDVPAEDSDRHGSIEPGSEKAANAVERSGIPILEVKNLCHRYPHLDA
NTLEEINLKVYKGERVAVLGANGAGKSTLFKHLNGILKPLSGEVLVKGEKITKKNVRMCR
ETVGIVFQDPDDQVLAPSVEEDIAFGPINMGLSSEEVEKRVKEALKMVGLEGFEERAPHH
LSGGQKKLVAIAGILAMRPEVIVLDEPTAGLDPLSSARFLELIMKMNKELGITLLLSTHD
VDVVPYFAERVFVLHHGKLEADGIPEEIFSDPELLRKAHLRLPRIAEIFEMLQQEGVDIN
IKITAEKARDEILRVMDSRFQTFRMG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory