SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011187452.1 NCBI__GCF_000025945.1:WP_011187452.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
35% identity, 51% coverage: 135:278/280 of query aligns to 62:205/506 of A0A0H2ZQB9

query
sites
A0A0H2ZQB9
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Sites not aligning to the query:

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
28% identity, 86% coverage: 29:269/280 of query aligns to 7:234/553 of B5Z7I3

query
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B5Z7I3
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Sites not aligning to the query:

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
21% identity, 54% coverage: 127:277/280 of query aligns to 106:260/265 of 8wm8B

query
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8wm8B
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Query Sequence

>WP_011187452.1 NCBI__GCF_000025945.1:WP_011187452.1
MLNFEDQVIPLDTWINTFVDWLVEGYRWFFQAIKWPIEQTLSGAENGLLALPPIIVIAVV
CLIAWRVSGKRLAFGSLLAMVFIGLLGLWEETMITLAMVLSSVVFCMIAGIPLGILAGRS
NRFNTFLRPVLDAMQTTPAFVYLVPIVMLFSIGNVAGVIATIVFALPPLVRLTSLGIRQV
HPELVEAALAFGATGWQVLFKVQIPLALPTIMAGINQTIMMALSMVVIAALIGAGGLGAP
VVLGLNTLDIGGATVGGLGIVLMAIILDRITQAMGKKKGK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory