SitesBLAST
Comparing WP_011280915.1 NCBI__GCF_000012305.1:WP_011280915.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
24% identity, 71% coverage: 5:253/352 of query aligns to 56:306/466 of 6lpxA
- binding flavin-adenine dinucleotide: P75 (≠ I24), Q76 (≠ M25), G77 (= G26), G78 (= G27), N79 (≠ G28), T80 (≠ S29), G81 (≠ K30), M82 (≠ Q31), G85 (= G34), S86 (≠ R35), L139 (≠ P86), G140 (≠ P87), A141 (≠ T88), C145 (≠ A93), G149 (= G97), N150 (≠ T98), A152 (= A100), T153 (≠ C101), G157 (= G105), G207 (= G155), I212 (= I160)
Sites not aligning to the query:
- binding 2-oxoglutaric acid: 333, 337, 348, 379, 381, 388, 423
- binding flavin-adenine dinucleotide: 39, 422, 459
- binding zinc ion: 381, 388, 422
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
24% identity, 71% coverage: 5:253/352 of query aligns to 56:306/466 of 6lpuA
- binding flavin-adenine dinucleotide: P75 (≠ I24), G77 (= G26), G78 (= G27), N79 (≠ G28), T80 (≠ S29), G81 (≠ K30), G85 (= G34), S86 (≠ R35), L139 (≠ P86), G140 (≠ P87), A141 (≠ T88), C145 (≠ A93), H146 (≠ T94), G148 (= G96), G149 (= G97), N150 (≠ T98), A152 (= A100), T153 (≠ C101), A155 (≠ L103), E206 (≠ M154), G207 (= G155), I211 (= I159), I212 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 39, 422, 459
- binding (2s)-2-hydroxypentanedioic acid: 333, 337, 348, 379, 381, 388, 423
- binding zinc ion: 381, 388, 422
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
24% identity, 71% coverage: 5:253/352 of query aligns to 56:306/466 of 6lpqA
- binding flavin-adenine dinucleotide: P75 (≠ I24), G77 (= G26), G78 (= G27), N79 (≠ G28), T80 (≠ S29), G81 (≠ K30), G85 (= G34), S86 (≠ R35), L139 (≠ P86), G140 (≠ P87), A141 (≠ T88), C145 (≠ A93), H146 (≠ T94), G149 (= G97), N150 (≠ T98), A152 (= A100), T153 (≠ C101), A155 (≠ L103), G157 (= G105), E206 (≠ M154), G207 (= G155), I211 (= I159), I212 (= I160)
- binding d-malate: M82 (≠ Q31)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 39, 422, 459
- binding d-malate: 333, 337, 348, 379, 381, 388, 422, 423
- binding zinc ion: 381, 388, 422
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
24% identity, 71% coverage: 5:253/352 of query aligns to 56:306/466 of 6lppA
- binding flavin-adenine dinucleotide: P75 (≠ I24), G77 (= G26), G78 (= G27), N79 (≠ G28), T80 (≠ S29), G81 (≠ K30), M82 (≠ Q31), G85 (= G34), S86 (≠ R35), L139 (≠ P86), G140 (≠ P87), A141 (≠ T88), C145 (≠ A93), G149 (= G97), N150 (≠ T98), A152 (= A100), T153 (≠ C101), A155 (≠ L103), G157 (= G105), G207 (= G155), I212 (= I160)
Sites not aligning to the query:
- binding (2R)-2-hydroxypentanedioic acid: 333, 337, 348, 379, 381, 388, 390, 423
- binding flavin-adenine dinucleotide: 39, 422, 423
- binding zinc ion: 381, 388, 422
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
24% identity, 71% coverage: 5:253/352 of query aligns to 57:307/467 of 6lpnB
- binding flavin-adenine dinucleotide: P76 (≠ I24), G78 (= G26), G79 (= G27), N80 (≠ G28), T81 (≠ S29), G82 (≠ K30), M83 (≠ Q31), G86 (= G34), S87 (≠ R35), L140 (≠ P86), A142 (≠ T88), C146 (≠ A93), H147 (≠ T94), G150 (= G97), N151 (≠ T98), A153 (= A100), T154 (≠ C101), G208 (= G155), I212 (= I159), I213 (= I160)
Sites not aligning to the query:
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
24% identity, 71% coverage: 5:253/352 of query aligns to 109:359/521 of Q8N465
- S109 (= S5) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ Q23) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G27) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ S43) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (vs. gap) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ T66) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (≠ A83) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (= A100) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ G126) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (≠ A128) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 375 D → Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- 386 binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; R→A: Loss of catalytic activity.
- 390 binding (R)-2-hydroxyglutarate; binding (R)-malate; T→A: Significantly reduced catalytic activity.
- 399 V → M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
- 401 binding (R)-2-hydroxyglutarate; binding (R)-malate; K→A: Loss of catalytic activity.
- 419 R → H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- 426 A → T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- 434 binding Zn(2+); H→A: Loss of catalytic activity.
- 436 G → V: slight reduction in catalytic activity
- 439 N → D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- 441 binding Zn(2+); H→A: Loss of catalytic activity.
- 443 binding (R)-2-hydroxyglutarate; N→A: Significantly reduced catalytic activity.
- 444 V → A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- 446 A → V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- 475 binding Zn(2+); E→A: Loss of catalytic activity.
- 476 binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; H→A: Loss of catalytic activity.
- 477 G → R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
7qh2C Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
27% identity, 36% coverage: 50:177/352 of query aligns to 101:226/467 of 7qh2C
- binding flavin-adenine dinucleotide: P137 (≠ T88), G138 (≠ F89), E139 (≠ N90), A142 (= A93), T143 (= T94), G146 (= G97), N147 (≠ T98), S149 (≠ A100), T150 (≠ C101), A152 (≠ L103), G153 (≠ S104), E203 (≠ M154), G204 (= G155), I209 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 73, 75, 76, 77, 78, 79, 80, 83, 84, 422, 423
- binding fe (iii) ion: 377, 384, 422
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
28% identity, 49% coverage: 5:176/352 of query aligns to 50:222/465 of 3pm9A
- active site: A149 (≠ L103), L159 (≠ S113)
- binding flavin-adenine dinucleotide: P69 (≠ I24), Q70 (≠ M25), G71 (= G26), G72 (= G27), N73 (≠ G28), T74 (≠ S29), G75 (≠ K30), L76 (≠ Q31), G79 (= G34), Q80 (≠ R35), L91 (= L44), L133 (≠ P86), G134 (≠ P87), A135 (≠ T88), C139 (≠ A93), T140 (= T94), G142 (= G96), G143 (= G97), S146 (≠ A100), T147 (≠ C101), A149 (≠ L103), G150 (≠ S104), E200 (≠ M154), G201 (= G155), I205 (= I159), I206 (= I160)
Sites not aligning to the query:
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
24% identity, 48% coverage: 5:173/352 of query aligns to 76:246/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
24% identity, 47% coverage: 6:170/352 of query aligns to 50:214/459 of P9WIT1
Sites not aligning to the query:
- 354 modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
2uuvC Alkyldihydroxyacetonephosphate synthase in p1 (see paper)
28% identity, 54% coverage: 5:193/352 of query aligns to 126:322/491 of 2uuvC
- binding flavin-adenine dinucleotide: P146 (vs. gap), G148 (= G26), G149 (= G27), G150 (= G28), S151 (= S29), N152 (≠ K30), I153 (≠ Q31), A156 (≠ G34), I157 (≠ R35), P211 (= P86), D212 (≠ P87), S213 (≠ T88), S217 (≠ A93), T218 (= T94), G221 (= G97), A224 (= A100), T225 (≠ C101), S227 (≠ L103), S228 (= S104), E270 (≠ M154), G271 (= G155), I276 (= I160)
Sites not aligning to the query:
2uuuA Alkyldihydroxyacetonephosphate synthase in p212121 (see paper)
27% identity, 54% coverage: 5:193/352 of query aligns to 138:335/550 of 2uuuA
- binding flavin-adenine dinucleotide: P158 (vs. gap), G160 (= G26), G161 (= G27), G162 (= G28), S163 (= S29), N164 (≠ K30), I165 (≠ Q31), A168 (≠ G34), I169 (≠ R35), P225 (= P86), D226 (≠ P87), S227 (≠ T88), S231 (≠ A93), T232 (= T94), G235 (= G97), W236 (≠ T98), A238 (= A100), T239 (≠ C101), S241 (≠ L103), S242 (= S104), E283 (≠ M154), G284 (= G155), I288 (= I159), I289 (= I160)
- binding hexadecan-1-ol: I165 (≠ Q31)
Sites not aligning to the query:
8jdpA Crystal structure of h405a mldhd in complex with d-2-hydroxyisovaleric acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/455 of 8jdpA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 369, 413, 450
- binding deaminohydroxyvaline: 319, 414
8jdtA Crystal structure of mldhd in complex with 2-ketobutanoic acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/455 of 8jdtA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding 2-ketobutyric acid: 318, 369, 376, 414
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 322, 413, 414, 450
- binding manganese (ii) ion: 369, 376, 413
8jdxA Crystal structure of mldhd in complex with 2-ketoisovaleric acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/455 of 8jdxA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 32, 68, 70, 71, 72, 73, 74, 78, 79, 322, 413, 414, 450
- binding 3-methyl-2-oxobutanoic acid: 318, 369, 376, 414
- binding manganese (ii) ion: 369, 376, 413
8jdsA Crystal structure of mldhd in complex with pyruvate (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/456 of 8jdsA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 32, 68, 70, 71, 72, 73, 74, 78, 79, 323, 414, 415, 451
- binding manganese (ii) ion: 370, 377, 414
- binding pyruvic acid: 319, 370, 377, 415
8jdrA Crystal structure of h405a mldhd in complex with d-2-hydroxy-3-methyl- valeric acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/456 of 8jdrA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 324, 370, 414, 451
- binding (2R,3S)-3-methyl-2-oxidanyl-pentanoic acid: 319, 323, 415
8jdqA Crystal structure of h405a mldhd in complex with d-2-hydroxyisocaproic acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/456 of 8jdqA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding (2R)-2-hydroxy-4-methylpentanoic acid: 319, 323, 370, 415
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 370, 414, 451
8jdoA Crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/456 of 8jdoA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding (2R)-2-hydroxyhexanoic acid: 319, 323, 415
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 324, 370, 414, 451
8jdnA Crystal structure of h405a mldhd in complex with d-2-hydroxyvaleric acid (see paper)
27% identity, 39% coverage: 39:175/352 of query aligns to 85:221/456 of 8jdnA
- binding flavin-adenine dinucleotide: L90 (= L44), P132 (= P86), G133 (≠ N90), A134 (≠ G91), G140 (= G97), M141 (≠ T98), A143 (= A100), T144 (≠ C101), A146 (≠ L103), S147 (= S104), E200 (≠ M154), G201 (= G155), I206 (= I160)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 68, 70, 71, 72, 73, 74, 78, 79, 370, 414, 451
- binding (2R)-2-oxidanylpentanoic acid: 319, 323, 415
Query Sequence