SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011371944.1 NCBI__GCF_000012965.1:WP_011371944.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

2h9dD Pyruvate-bound structure of the isochorismate-pyruvate lyase from pseudomonas aerugionsa (see paper)
28% identity, 99% coverage: 1:99/100 of query aligns to 1:99/100 of 2h9dD

query
sites
2h9dD
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Q51507 Isochorismate pyruvate lyase; IPL; Chorismate mutase; CM; Salicylate biosynthesis protein; EC 4.2.99.21; EC 5.4.99.5 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 5 papers)
28% identity, 99% coverage: 1:99/100 of query aligns to 1:99/101 of Q51507

query
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Q51507
M
 
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Query Sequence

>WP_011371944.1 NCBI__GCF_000012965.1:WP_011371944.1
MSEVKKCNSLLEIRNEIDKIDDLIVELISKRSHLVRQAASFKNSIEEVKADDRVDYILQK
VRHSAIKADVSPNMISDLFKIMINEMVETEISEFRNTQTF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory