Comparing WP_011372418.1 NCBI__GCF_000012965.1:WP_011372418.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
39% identity, 97% coverage: 4:219/223 of query aligns to 3:217/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
39% identity, 97% coverage: 4:219/223 of query aligns to 3:217/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
39% identity, 97% coverage: 4:219/223 of query aligns to 3:217/229 of 6z67B
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
36% identity, 92% coverage: 14:219/223 of query aligns to 11:215/222 of 8i6rB
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
36% identity, 95% coverage: 10:220/223 of query aligns to 7:216/219 of 8w6iD
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
36% identity, 98% coverage: 4:222/223 of query aligns to 2:220/220 of 8tzjA
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
36% identity, 95% coverage: 10:220/223 of query aligns to 7:216/222 of P0A9R7
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
35% identity, 95% coverage: 10:220/223 of query aligns to 7:216/218 of 8hd0A
8g4cB Bceabs atpgs high res tm (see paper)
37% identity, 83% coverage: 16:200/223 of query aligns to 18:203/248 of 8g4cB
Sites not aligning to the query:
7tchB Bceab e169q variant atp-bound conformation (see paper)
36% identity, 83% coverage: 16:200/223 of query aligns to 17:202/245 of 7tchB
Sites not aligning to the query:
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
38% identity, 90% coverage: 1:201/223 of query aligns to 1:206/233 of P75957
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
38% identity, 83% coverage: 15:200/223 of query aligns to 13:197/229 of A5U7B7
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
38% identity, 83% coverage: 15:200/223 of query aligns to 14:198/225 of 8iddA
Sites not aligning to the query:
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
38% identity, 83% coverage: 15:200/223 of query aligns to 14:198/227 of 8igqA
Sites not aligning to the query:
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
41% identity, 81% coverage: 20:200/223 of query aligns to 18:198/223 of 2pclA
7mdyC Lolcde nucleotide-bound
39% identity, 82% coverage: 20:201/223 of query aligns to 21:203/226 of 7mdyC
Sites not aligning to the query:
7arlD Lolcde in complex with lipoprotein and adp (see paper)
39% identity, 82% coverage: 20:201/223 of query aligns to 21:203/222 of 7arlD
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 81% coverage: 21:201/223 of query aligns to 21:201/343 of P30750
Sites not aligning to the query:
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
37% identity, 90% coverage: 2:201/223 of query aligns to 1:205/229 of 7v8iD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 81% coverage: 21:201/223 of query aligns to 22:202/344 of 3tuzC
Sites not aligning to the query:
>WP_011372418.1 NCBI__GCF_000012965.1:WP_011372418.1
MNKVIIAKDLSLAYSNNETIINKANFSISSADFVFITGASGSGKSTLLKSLFGALKLKHG
SLVVGGVELSNVSRSKLNFLRRHIGIVFQDYKLVKEWSIDKNIMLPLLINGYVKGVAQNQ
VDKLLKHVRLNHQTGKYPLELSGGEQQRVAMARALAHNPILILADEPTGNLDEYSSGLIW
NLLEGANEQLKTTVIVVTHNIPKTLNVNYKHFHIEYGSIHEVC
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory