SitesBLAST
Comparing WP_011382617.1 NCBI__GCF_000009985.1:WP_011382617.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
7vw6A Cryo-em structure of formate dehydrogenase 1 from methylorubrum extorquens am1 (see paper)
63% identity, 100% coverage: 2:888/891 of query aligns to 2:912/913 of 7vw6A
- binding fe2/s2 (inorganic) cluster: H32 (= H32), C34 (= C34), H35 (= H35), G45 (= G45), C47 (= C47), R48 (= R48), C50 (= C50), C64 (= C64)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K263 (= K253), K339 (= K322), C364 (= C347), L367 (= L350), C368 (= C351), G402 (= G385), A403 (= A386), N404 (= N387), V407 (≠ A390), N408 (= N391), H409 (= H392), D431 (= D413), P432 (= P414), R433 (= R415), F447 (= F429), P449 (≠ N431), G450 (= G432), D452 (= D434), G525 (= G507), M526 (= M508), G527 (= G509), Q530 (= Q512), H531 (= H513), G563 (= G545), Q564 (= Q546), Q564 (= Q546), G630 (= G612), E631 (= E613), N632 (= N614), S636 (= S618), Q656 (= Q638), D657 (= D639), L658 (≠ I640), S674 (= S656), A675 (≠ S657), D706 (= D688), S804 (= S780), T805 (= T781), R807 (= R783), R807 (= R783), V808 (= V784), L809 (= L785), H811 (= H787), W812 (= W788), W812 (= W788), H813 (= H789), H813 (= H789), T814 (= T790), M817 (= M793), F879 (= F855), N887 (= N863), F903 (≠ L879), K904 (= K880), K904 (= K880)
- binding iron/sulfur cluster: M138 (= M135), C145 (= C142), I146 (= I143), Q147 (≠ H144), C148 (= C145), N149 (≠ T146), L150 (= L147), C151 (= C148), C155 (= C152), N161 (= N158), V163 (= V160), I164 (= I161), V175 (≠ I172), F177 (= F174), C188 (= C185), V189 (= V186), A190 (≠ G187), C191 (= C188), G192 (= G189), E193 (= E190), C194 (= C191), C198 (= C195), P199 (= P196), T200 (= T197), A202 (= A199), L203 (= L200), C227 (= C217), C230 (= C220), V232 (= V222), G233 (= G223), C234 (= C224), L260 (= L250), C261 (= C251), K263 (= K253), G264 (= G254), P410 (= P393), V411 (= V394)
6tg9A Cryo-em structure of nadh reduced form of NAD+-dependent formate dehydrogenase from rhodobacter capsulatus (see paper)
37% identity, 99% coverage: 2:886/891 of query aligns to 19:925/949 of 6tg9A
- active site: K289 (= K253), C380 (= C351), H381 (= H352), L545 (≠ M508), G582 (= G545), Q583 (= Q546)
- binding fe2/s2 (inorganic) cluster: C51 (= C34), V59 (≠ E44), G60 (= G45), C62 (= C47), C65 (= C50), C79 (= C64)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: C255 (= C220), K289 (= K253), R351 (≠ K322), C352 (≠ G323), C380 (= C351), C380 (= C351), G414 (= G385), A415 (= A386), N416 (= N387), D419 (≠ A390), G420 (≠ N391), H421 (= H392), V441 (≠ L412), D442 (= D413), P443 (= P414), R444 (= R415), P464 (≠ N431), G465 (= G432), N467 (≠ D434), G544 (= G507), L545 (≠ M508), L545 (≠ M508), G546 (= G509), E549 (≠ Q512), H550 (= H513), G582 (= G545), Q583 (= Q546), Q583 (= Q546), G649 (= G612), E650 (= E613), D651 (≠ N614), S655 (= S618), H675 (≠ Q638), D676 (= D639), N680 (≠ T643), S693 (= S656), T694 (≠ S657), K698 (= K661), D724 (≠ L689), T820 (≠ S780), T821 (= T781), G822 (= G782), R823 (= R783), R823 (= R783), I824 (≠ V784), L825 (= L785), Q827 (≠ H787), Y828 (≠ W788), Y828 (≠ W788), N829 (≠ H789), N829 (≠ H789), V830 (≠ T790), A832 (≠ S792), Q833 (≠ M793), F894 (= F855), H895 (≠ C856), N902 (= N863), Y918 (≠ L879), K919 (= K880), K919 (= K880)
- binding iron/sulfur cluster: H111 (= H96), D114 (vs. gap), C115 (vs. gap), C118 (≠ A97), A120 (≠ P99), N121 (≠ D100), C124 (≠ S103), Q127 (≠ L106), F169 (≠ M135), K175 (≠ A141), C176 (= C142), I177 (= I143), V178 (≠ H144), C179 (= C145), M180 (≠ T146), R181 (≠ L147), C182 (= C148), C186 (= C152), L195 (≠ I161), I206 (= I172), C218 (= C185), V219 (= V186), S220 (≠ G187), C221 (= C188), G222 (= G189), C224 (= C191), C228 (= C195), T230 (= T197), A231 (≠ G198), T232 (≠ A199), L233 (= L200), C252 (= C217), Y254 (= Y219), C255 (= C220), V257 (= V222), C259 (= C224), F261 (≠ V226), C287 (= C251), K289 (= K253), G290 (= G254), P422 (= P393), V423 (= V394)
1fdiA Oxidized form of formate dehydrogenase h from e. Coli complexed with the inhibitor nitrite (see paper)
37% identity, 76% coverage: 211:891/891 of query aligns to 2:690/715 of 1fdiA
- active site: C11 (= C220), L41 (= L250), C42 (= C251), K44 (= K253), S108 (= S320), R110 (≠ K322), D134 (= D345), C140 (= C351), H141 (= H352), S180 (≠ N391), M297 (= M508), R333 (= R544), G334 (= G545), Q335 (= Q546)
- binding molybdenum(vi) ion: C140 (= C351), Q335 (= Q546)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K44 (= K253), R110 (≠ K322), G111 (= G323), T112 (≠ S324), C136 (= C347), V139 (≠ L350), C140 (= C351), F173 (≠ I384), G174 (= G385), Y175 (≠ A386), N176 (= N387), D179 (≠ A390), S180 (≠ N391), C201 (≠ L412), D202 (= D413), P203 (= P414), R204 (= R415), L218 (≠ F429), N220 (= N431), G221 (= G432), N223 (≠ D434), G296 (= G507), M297 (= M508), G298 (= G509), Q301 (= Q512), F302 (≠ H513), G334 (= G545), Q335 (= Q546), Q335 (= Q546), G402 (= G612), E403 (= E613), D404 (≠ N614), T408 (≠ S618), Q428 (= Q638), D429 (= D639), I430 (= I640), F431 (= F641), T433 (= T643), S445 (≠ A655), T446 (≠ S656), D478 (= D688), S578 (= S780), T579 (= T781), V580 (≠ G782), R581 (= R783), R581 (= R783), E582 (≠ V784), V583 (≠ L785), H585 (= H787), Y586 (≠ W788), S587 (≠ H789), S587 (≠ H789), C588 (≠ T790), Y654 (≠ F855), Y654 (≠ F855), Q655 (≠ C856), C661 (≠ A862), N662 (= N863), Y678 (≠ L879), K679 (= K880)
- binding nitrite ion: C140 (= C351), H141 (= H352), R333 (= R544), G334 (= G545), V338 (= V549)
- binding iron/sulfur cluster: C8 (= C217), Y10 (= Y219), C11 (= C220), S13 (≠ V222), C15 (= C224), L41 (= L250), C42 (= C251), K44 (= K253), G45 (= G254), P182 (= P393), I183 (≠ V394)
P07658 Formate dehydrogenase H; Formate dehydrogenase-H subunit alpha; FDH-H; Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide; EC 1.17.98.4 from Escherichia coli (strain K12) (see 2 papers)
37% identity, 76% coverage: 211:891/891 of query aligns to 2:690/715 of P07658
- C8 (= C217) binding
- Y10 (= Y219) binding
- C11 (= C220) binding
- C15 (= C224) binding
- C42 (= C251) binding
- K44 (= K253) binding
- U140 (≠ C351) modified: nonstandard, Selenocysteine
- M297 (= M508) binding
- Q301 (= Q512) binding
- Q335 (= Q546) binding
- S445 (≠ A655) binding
- D478 (= D688) binding
- C588 (≠ T790) binding
- Y654 (≠ F855) binding
- Q655 (≠ C856) binding
- Y678 (≠ L879) binding
- K679 (= K880) binding
2iv2X Reinterpretation of reduced form of formate dehydrogenase h from e. Coli (see paper)
36% identity, 76% coverage: 211:891/891 of query aligns to 2:672/697 of 2iv2X