SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011384086.1 NCBI__GCF_000009985.1:WP_011384086.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

5c4iE Structure of an oxalate oxidoreductase (see paper)
49% identity, 81% coverage: 15:86/89 of query aligns to 236:307/312 of 5c4iE

query
sites
5c4iE
T
 
T
E
 
E
Y
 
N
T
 
E
T
 
G
M
 
M
L
 
V
T
 
T
G
 
G
D
 
N
W
 
W
R
 
R
A
 
I
L
 
Q
R
 
R
P
 
P
I
 
I
V
 
I
D
 
D
R
 
R
D
 
E
R
 
A
C
|
C
V
x
T
K
x
E
C
|
C
A
x
Y
T
 
T
C
|
C
W
 
W
L
 
I
Y
 
Y
C
|
C
P
 
P
V
 
D
Q
 
S
C
|
C
V
 
I
V
 
T
E
 
R
K
 
T
A
 
E
A
 
E
W
 
G
F
 
P
D
 
V
F
 
F
N
 
N
Y
 
M
D
 
K
Y
 
Y
C
|
C
K
|
K
G
|
G
C
|
C
G
|
G
I
 
L
C
|
C
A
 
T
E
 
A
E
 
V
C
|
C
P
|
P
H
x
S
R
 
G
A
 
A
I
x
L
K
 
T
M
 
N
V
 
V
E
 
P
E
 
E

5exdH Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
49% identity, 81% coverage: 15:86/89 of query aligns to 215:286/291 of 5exdH

query
sites
5exdH
T
 
T
E
 
E
Y
 
N
T
 
E
T
 
G
M
 
M
L
 
V
T
 
T
G
 
G
D
 
N
W
 
W
R
 
R
A
 
I
L
 
Q
R
 
R
P
|
P
I
 
I
V
 
I
D
 
D
R
 
R
D
 
E
R
 
A
C
|
C
V
x
T
K
x
E
C
|
C
A
x
Y
T
 
T
C
|
C
W
 
W
L
 
I
Y
 
Y
C
|
C
P
 
P
V
 
D
Q
 
S
C
 
C
V
 
I
V
 
T
E
 
R
K
 
T
A
 
E
A
 
E
W
 
G
F
x
P
D
 
V
F
 
F
N
 
N
Y
 
M
D
 
K
Y
 
Y
C
|
C
K
|
K
G
|
G
C
|
C
G
|
G
I
 
L
C
|
C
A
 
T
E
 
A
E
 
V
C
|
C
P
 
P
H
x
S
R
 
G
A
 
A
I
x
L
K
 
T
M
 
N
V
 
V
E
 
P
E
 
E

7p63I Complex i from e. Coli, ddm/lmng-purified, under turnover at ph 6, closed state (see paper)
34% identity, 61% coverage: 35:88/89 of query aligns to 58:121/180 of 7p63I

query
sites
7p63I
D
 
E
R
 
R
C
|
C
V
|
V
K
x
A
C
|
C
A
x
N
T
 
L
C
|
C
W
 
A
L
 
V
Y
 
A
C
|
C
P
 
P
V
 
V
Q
 
G
C
|
C
V
x
I
V
 
S
E
 
L
K
 
Q
A
 
K
A
 
A
-
 
E
-
 
T
-
 
K
-
 
D
-
 
G
-
 
R
-
 
W
-
 
Y
-
 
P
-
 
E
W
 
F
F
|
F
D
 
R
F
 
I
N
 
N
Y
 
F
D
 
S
Y
 
R
C
|
C
K
x
I
G
x
F
C
|
C
G
|
G
I
x
L
C
|
C
A
 
E
E
 
E
E
 
A
C
|
C
P
|
P
H
x
T
R
 
T
A
 
A
I
|
I
K
 
Q
M
 
L
V
 
T
E
 
P
E
 
D
A
 
F
E
 
E

Sites not aligning to the query:

Query Sequence

>WP_011384086.1 NCBI__GCF_000009985.1:WP_011384086.1
MSLRNVPDNMCPIATEYTTMLTGDWRALRPIVDRDRCVKCATCWLYCPVQCVVEKAAWFD
FNYDYCKGCGICAEECPHRAIKMVEEAEG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory