SitesBLAST
Comparing WP_011384424.1 NCBI__GCF_000009985.1:WP_011384424.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
O33820 4-hydroxybenzoyl-CoA reductase subunit beta; 4-HBCR subunit beta; EC 1.1.7.1 from Thauera aromatica (see paper)
73% identity, 100% coverage: 1:324/324 of query aligns to 1:324/324 of O33820
- 29:36 (vs. 29:36, 75% identical) binding
- T111 (= T111) binding
- N115 (= N115) binding
- Q118 (= Q118) binding
- D162 (= D162) binding
- K224 (= K224) binding
1rm6B Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
74% identity, 99% coverage: 1:322/324 of query aligns to 1:322/323 of 1rm6B
- binding flavin-adenine dinucleotide: P29 (= P29), G31 (≠ A31), A32 (≠ G32), G33 (= G33), T34 (= T34), D35 (= D35), L36 (= L36), L53 (= L53), V101 (= V101), A102 (= A102), A110 (= A110), T111 (= T111), G114 (= G114), N115 (= N115), C117 (= C117), Q118 (= Q118), D162 (= D162), L207 (= L207), V231 (≠ I231), D232 (= D232), F233 (= F233)
- binding iron/sulfur cluster: C122 (= C122), F124 (= F124), C138 (= C138), C146 (= C146), H147 (= H147), V148 (= V148), C155 (= C155), Y156 (= Y156), A157 (= A157)
5g5gB Escherichia coli periplasmic aldehyde oxidase (see paper)
35% identity, 86% coverage: 18:295/324 of query aligns to 16:286/316 of 5g5gB
- binding flavin-adenine dinucleotide: K26 (≠ E28), F27 (≠ P29), A29 (= A31), G30 (= G32), G31 (= G33), T32 (= T34), N33 (≠ D35), L34 (= L36), G98 (= G103), A99 (≠ P104), L103 (vs. gap), A107 (= A110), T108 (= T111), A110 (≠ G113), G111 (= G114), N112 (= N115), L114 (≠ C117), Q115 (= Q118), S163 (≠ G161), D164 (= D162), L212 (≠ V206), I213 (≠ L207), F239 (= F233)
- binding iron/sulfur cluster: C119 (= C122), C129 (≠ E129), N130 (≠ W130), K131 (≠ W131), C138 (= C138), H148 (= H147), C157 (= C155), I158 (≠ Y156), A159 (= A157)
P77324 Aldehyde oxidoreductase FAD-binding subunit PaoB; EC 1.2.99.6 from Escherichia coli (strain K12) (see paper)
35% identity, 86% coverage: 18:295/324 of query aligns to 16:286/318 of P77324
- 26:34 (vs. 28:36, 56% identical) binding
- T108 (= T111) binding
- C119 (= C122) binding
- C129 (≠ E129) binding
- C138 (= C138) binding
- C157 (= C155) binding
- D164 (= D162) binding
- I213 (≠ L207) binding
- K230 (= K224) binding
5y6qB Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
29% identity, 91% coverage: 14:309/324 of query aligns to 11:319/330 of 5y6qB
- binding flavin-adenine dinucleotide: I26 (≠ P29), A28 (= A31), G29 (= G32), G30 (= G33), T31 (= T34), T32 (≠ D35), Q33 (≠ L36), A97 (≠ V101), A98 (= A102), I102 (≠ H106), A106 (= A110), T107 (= T111), G110 (= G114), N111 (= N115), R113 (≠ C117), Q114 (= Q118), G164 (= G161), D165 (= D162), I213 (≠ V206), I214 (≠ L207), K232 (= K224), F241 (= F233)
- binding iron/sulfur cluster: C118 (= C122), Y121 (= Y125), C130 (≠ G134), N131 (= N135), C139 (= C138), A141 (≠ K140), C158 (= C155), I159 (≠ Y156), A160 (= A157)
1n5wC Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
31% identity, 95% coverage: 7:314/324 of query aligns to 6:285/287 of 1n5wC
P19920 Carbon monoxide dehydrogenase medium chain; CO dehydrogenase subunit M; CO-DH M; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
31% identity, 95% coverage: 7:314/324 of query aligns to 6:285/288 of P19920
4zohB Crystal structure of glyceraldehyde oxidoreductase (see paper)
24% identity, 96% coverage: 5:315/324 of query aligns to 4:267/274 of 4zohB
- active site: Y256 (= Y304)
- binding flavin-adenine dinucleotide: R28 (≠ E28), P29 (= P29), A31 (= A31), G32 (= G32), G33 (= G33), H34 (≠ T34), S35 (≠ D35), L36 (= L36), H77 (≠ L78), I95 (≠ V101), G96 (≠ A102), V100 (≠ H106), T105 (= T111), G108 (= G114), S109 (≠ N115), S111 (≠ C117), A117 (≠ G161), D118 (= D162), L160 (≠ V206), V161 (≠ L207), D185 (= D232), F186 (= F233)
1ffuC Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor (see paper)
30% identity, 81% coverage: 3:263/324 of query aligns to 2:221/287 of 1ffuC
- binding flavin-adenine dinucleotide: K29 (≠ E28), L30 (≠ P29), A32 (= A31), G33 (= G32), G34 (= G33), H35 (≠ T34), S36 (≠ D35), L37 (= L36), I54 (≠ L53), I101 (≠ V101), A102 (= A102), G110 (≠ A110), T111 (= T111), G114 (= G114), D115 (≠ N115), A117 (≠ C117), N123 (≠ D162), D124 (≠ V163), L161 (= L201), V166 (= V206), M167 (≠ L207), W193 (≠ F233)
Q0QLF4 Nicotinate dehydrogenase FAD-subunit; NDH; Nicotinic acid hydroxylase FAD-subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
21% identity, 96% coverage: 4:315/324 of query aligns to 1:281/296 of Q0QLF4
- 29:36 (vs. 30:36, 75% identical) binding
- G101 (≠ A102) binding
- TIGGN 110:114 (≠ TLGGN 111:115) binding
- D123 (= D162) binding
- R160 (≠ L199) binding
- M169 (≠ L207) binding
- K187 (= K224) binding
3hrdG Crystal structure of nicotinate dehydrogenase (see paper)
21% identity, 96% coverage: 4:315/324 of query aligns to 1:281/292 of 3hrdG
- binding flavin-adenine dinucleotide: I29 (vs. gap), A31 (= A31), G32 (= G32), G33 (= G33), T34 (= T34), D35 (= D35), F77 (≠ L78), V100 (= V101), G101 (≠ A102), I105 (≠ H106), T110 (= T111), G113 (= G114), N114 (= N115), S116 (≠ C117), T117 (≠ Q118), G122 (= G161), D123 (= D162), I168 (≠ V206), M169 (≠ L207)
1t3qC Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
28% identity, 78% coverage: 4:256/324 of query aligns to 3:213/285 of 1t3qC
- binding flavin-adenine dinucleotide: I29 (≠ P29), A31 (= A31), G32 (= G32), G33 (= G33), Q34 (≠ T34), S35 (≠ D35), L36 (= L36), V100 (= V101), A101 (= A102), V105 (≠ H106), T110 (= T111), G113 (= G114), S114 (≠ N115), A116 (≠ C117), A122 (vs. gap), E123 (vs. gap), L166 (= L207), Y190 (≠ F233)
7dqxE Crystal structure of xanthine dehydrogenase family protein
32% identity, 35% coverage: 5:118/324 of query aligns to 4:118/293 of 7dqxE
- binding flavin-adenine dinucleotide: K29 (≠ E28), I30 (≠ P29), I31 (≠ L30), G33 (= G32), G34 (= G33), Q35 (≠ T34), S36 (≠ D35), L37 (= L36), H78 (≠ L78), I101 (≠ V101), A102 (= A102), I106 (≠ H106), G110 (≠ A110), T111 (= T111), G113 (= G113), G114 (= G114), S115 (≠ N115), A117 (≠ C117)
Sites not aligning to the query:
Query Sequence
>WP_011384424.1 NCBI__GCF_000009985.1:WP_011384424.1
MNILPDFRTLRPASLSDAVAALAVPGAEPLAGGTDLLPNLRRGLGKPETLVDLTGITGFA
AISVGADGTLRIGAGATLEAVAEDARVLASWPVLAQAASLVAGPSHRAAATLGGNLCQDT
RCVFYNQSEWWRSGNGFCLKYEGDKCHVVVKSDRCYATYHGDVAPALMVLNASAEVVGPK
GVRLVPVADLFVESGAAHLSLDHGEVLAALLVPPATGWTAAYSKVRVRDAIDFPLAGVAV
ALKRDGNAIAGLRVAMTGTNSAPLMVPTDALWGRPWNDETAEALVQAVRKVSNVLKTTVA
GVKYRRRVLLAVARRQMDYLWNGK
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory