Comparing WP_011384430.1 NCBI__GCF_000009985.1:WP_011384430.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 96% coverage: 7:242/245 of query aligns to 2:236/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
37% identity, 96% coverage: 8:243/245 of query aligns to 3:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
37% identity, 96% coverage: 8:243/245 of query aligns to 3:237/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
36% identity, 98% coverage: 5:243/245 of query aligns to 1:238/241 of 6mbnA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 96% coverage: 7:242/245 of query aligns to 4:254/254 of 1g6hA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 93% coverage: 7:234/245 of query aligns to 1:233/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 93% coverage: 7:234/245 of query aligns to 2:234/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 93% coverage: 7:234/245 of query aligns to 2:234/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 93% coverage: 7:234/245 of query aligns to 2:234/344 of 6cvlD
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 96% coverage: 7:241/245 of query aligns to 4:253/253 of 1g9xB
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
36% identity, 96% coverage: 8:241/245 of query aligns to 3:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
36% identity, 95% coverage: 8:240/245 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
36% identity, 95% coverage: 8:240/245 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
36% identity, 95% coverage: 8:239/245 of query aligns to 3:233/233 of 6b8bA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
33% identity, 96% coverage: 7:241/245 of query aligns to 6:238/240 of 1ji0A
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
36% identity, 91% coverage: 7:229/245 of query aligns to 4:223/285 of 4yerA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 98% coverage: 2:242/245 of query aligns to 12:250/378 of P69874
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 93% coverage: 6:234/245 of query aligns to 1:228/241 of 4u00A
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
29% identity, 94% coverage: 3:233/245 of query aligns to 6:243/257 of P0AAH0
Sites not aligning to the query:
3d31A Modbc from methanosarcina acetivorans (see paper)
30% identity, 93% coverage: 7:233/245 of query aligns to 1:219/348 of 3d31A
Sites not aligning to the query:
>WP_011384430.1 NCBI__GCF_000009985.1:WP_011384430.1
MNTATPMLSVENLGKSFRGLRAVNQVAFEVPRGDIVALIGPNGAGKTTTFNLIAGALPPS
DGKVVLDGHDITGLGQAAICRAGVGRTFQIVKPFAGLSVEENVMVGALRHDNGDVDKARA
ASRATLDLLELGDKARDPAQTLTLPDRKRLEVAKALATRPKLLLLDEVMAGLRPVECDRM
VAILTGLNKETGLTILLIEHVMRAVMALSDHVVVLHHGEKIAEGTPAEVTSHPKVLECYL
GEDHE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory