Comparing WP_011384540.1 AMB_RS10820 benzoyl-CoA reductase subunit C to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
3o3mD (R)-2-hydroxyisocaproyl-coa dehydratase (see paper)
31% identity, 97% coverage: 11:389/391 of query aligns to 4:374/375 of 3o3mD
Q5U923 (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit; EC 4.2.1.157 from Clostridioides difficile (Peptoclostridium difficile) (see paper)
31% identity, 97% coverage: 11:389/391 of query aligns to 4:374/375 of Q5U923
7yzmA Mgadpnp-bound dccp:dccp-r complex (see paper)
20% identity, 87% coverage: 36:374/391 of query aligns to 68:411/422 of 7yzmA
Sites not aligning to the query:
>WP_011384540.1 AMB_RS10820 benzoyl-CoA reductase subunit C
MSGKNKSVADIMAVCQEMFEDLNFTYARKWKDAKPGRKVIGFLPVYSPIEMIHAAGCLPL
GIFGGGDQMEVIHGDAYYQSYICRIPRSTIELGVTNRLDFVDGMIFPFVCDVIRNLSGIW
KLMFPNVWSKFFDTPQNYDKSIGGTYYIQELHELKEGLETLTGRKISDADIQRSIGLYNE
NRRLIREVYAFRAKQPWLAPTSEVYVLMRAGLMMDVEEHNQMLKDYMAAAANEDRPKRDN
VRISIYGSFCEQPPLNLIKSIEMAGCYVVDDDYSLNNRFLMVDVPTTGNPLEALAMTYLE
NSVETSCKYVPDGKVKGQFHVDAVKACGAEGVIYATPSFCDPALLDRPMVCNKLSEAGIP
YIAFKYAENSGQMQPIREQAGTFADSIKLWS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory