Comparing WP_011384952.1 NCBI__GCF_000009985.1:WP_011384952.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
46% identity, 99% coverage: 1:224/226 of query aligns to 1:224/233 of P75957
7mdyC Lolcde nucleotide-bound
47% identity, 97% coverage: 6:224/226 of query aligns to 3:221/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
47% identity, 97% coverage: 6:224/226 of query aligns to 3:221/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
46% identity, 97% coverage: 6:224/226 of query aligns to 5:223/229 of 7v8iD
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
44% identity, 96% coverage: 6:223/226 of query aligns to 4:220/226 of 5xu1B
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
44% identity, 97% coverage: 6:224/226 of query aligns to 4:217/223 of 2pclA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
46% identity, 97% coverage: 6:224/226 of query aligns to 5:222/648 of P75831
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
42% identity, 96% coverage: 6:221/226 of query aligns to 2:221/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
41% identity, 96% coverage: 6:221/226 of query aligns to 2:221/230 of 1l2tA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
42% identity, 97% coverage: 6:225/226 of query aligns to 5:223/650 of 5ws4A
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
38% identity, 97% coverage: 6:225/226 of query aligns to 4:222/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
38% identity, 97% coverage: 6:225/226 of query aligns to 4:222/615 of 5lilA
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
39% identity, 98% coverage: 4:225/226 of query aligns to 1:222/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
39% identity, 98% coverage: 4:225/226 of query aligns to 1:222/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
39% identity, 98% coverage: 4:225/226 of query aligns to 1:222/344 of 6cvlD
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 97% coverage: 6:225/226 of query aligns to 2:221/343 of P30750
Sites not aligning to the query:
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
40% identity, 96% coverage: 6:223/226 of query aligns to 2:215/219 of 8w6iD
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
40% identity, 96% coverage: 6:223/226 of query aligns to 2:215/222 of P0A9R7
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
40% identity, 90% coverage: 22:225/226 of query aligns to 14:216/240 of 4ymuJ
Sites not aligning to the query:
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
39% identity, 96% coverage: 6:223/226 of query aligns to 2:215/218 of 8hd0A
>WP_011384952.1 NCBI__GCF_000009985.1:WP_011384952.1
MNNHGLKLDNIRRAFKQGKDDLEVLKGANLEIRAGEIVALVGPSGAGKSTLLHIAGLLER
PDGGEVFLAGNPAGALGEKERTQLRRLHLGFVYQYHHLLPEFSAIENVVLPQMIAGVPQA
KARERAMELLGRMKLAERAEHRPGQLSGGEQQRVAICRALANAPRVLLADEPTGNLDPHT
ADGVFDELIRLVKGSGVAALIATHNPDLAARMDRVVKMSEGLLVEV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory