Comparing WP_011384964.1 NCBI__GCF_000009985.1:WP_011384964.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
26% identity, 88% coverage: 21:450/486 of query aligns to 12:414/427 of 8b01B
>WP_011384964.1 NCBI__GCF_000009985.1:WP_011384964.1
MTQFLIANMAPLMFAALVFFLLIGYPVAFALAANGIVFGLVGIELGLLNASLFQALPERI
FGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPIRGGLAYAVIFVGALLAAT
TGVVAASVISMGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSLVLIIMADQLGRSV
GDMYAGAFIPGFVLTGLYAGFIFLVTMIRPSFAPALPPEARSLRGMGLLLRTVTCLVPPL
ILIFLVLGTIFIGVATPTEGGAMGAAGAMILALMKRKLDWNLMRQAMDTTAKLSCFVVFI
LVGSTVFGLVFRGVNGDLWVEHLMSSLPGGKLGFLIVTNVLMFVLAFFLDFFELAFILVP
LLGPVAEKMGIDLIWFGVLLGVNMQTSFMHPPFGFALFYLRSVAPKTDYIDKITNKLTPK
ITTGQIYWGAVPFVIIQIIMVGLVIAFPDLVTGGIDKAAAVDTSKIQIEVPQGEFGGGMY
GGPDSK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory