Comparing WP_011385951.1 NCBI__GCF_000009985.1:WP_011385951.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
52% identity, 88% coverage: 12:253/274 of query aligns to 4:238/240 of 1ji0A
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 81% coverage: 31:253/274 of query aligns to 20:253/253 of 1g9xB
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 81% coverage: 31:253/274 of query aligns to 20:253/254 of 1g6hA
Sites not aligning to the query:
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
35% identity, 82% coverage: 30:253/274 of query aligns to 17:235/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
34% identity, 82% coverage: 30:255/274 of query aligns to 17:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
34% identity, 82% coverage: 30:255/274 of query aligns to 17:237/238 of 6s8gA
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
34% identity, 82% coverage: 30:255/274 of query aligns to 18:238/241 of 6mbnA
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 82% coverage: 30:253/274 of query aligns to 17:235/235 of 6mhzA
Sites not aligning to the query:
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 81% coverage: 30:252/274 of query aligns to 17:234/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 81% coverage: 30:252/274 of query aligns to 17:234/234 of 4p31A
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 81% coverage: 30:251/274 of query aligns to 17:233/233 of 6b8bA
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
33% identity, 81% coverage: 30:250/274 of query aligns to 16:235/240 of 4ymuJ
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 77% coverage: 30:241/274 of query aligns to 17:223/241 of 4u00A
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
31% identity, 84% coverage: 4:232/274 of query aligns to 247:473/501 of P04983
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 81% coverage: 30:250/274 of query aligns to 18:237/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 81% coverage: 30:250/274 of query aligns to 18:237/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 81% coverage: 30:250/274 of query aligns to 18:237/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 81% coverage: 30:250/274 of query aligns to 18:237/242 of 2oljA
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 82% coverage: 30:254/274 of query aligns to 32:246/378 of P69874
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
29% identity, 77% coverage: 31:241/274 of query aligns to 20:223/285 of 4yerA
Sites not aligning to the query:
>WP_011385951.1 NCBI__GCF_000009985.1:WP_011385951.1
MGEPAVKLAPEEILLSVNNIEVVYDDVILVLRGVSLDVPKGKIVTLLGPNGAGKSTTLKA
ISGLLGTEDGEVTRGNITFMGEEIANRAPEDIVRRGIFQVMEGRRIIEDMTVIENLRLGA
FTRKDGGAAVRDDIEKVFHYFPRLKERTGLAGYLSGGEQQMLAIGRAMMARPKMILLDEP
SMGLSPLLVKEVFAIIETLCAETGITMLLVEQNARMALKIAQFGYIMESGKIVLDGAKED
LVNNEDVKEFYLGGDKERKSFKNLKSYKRRKRWL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory