SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011386874.1 NCBI__GCF_000009985.1:WP_011386874.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
50% identity, 61% coverage: 7:72/109 of query aligns to 113:178/200 of 6j2lA

query
sites
6j2lA
I
 
F
L
 
L
E
 
Y
E
 
Q
L
 
L
Y
 
E
T
 
Q
V
 
L
I
 
L
A
 
A
S
 
E
R
 
R
K
 
K
G
 
Y
T
 
A
D
 
D
P
 
P
D
 
E
K
 
T
S
 
S
Y
 
Y
T
 
T
A
 
A
K
 
K
L
 
L
F
 
Y
A
 
A
R
 
S
G
 
G
R
 
T
G
 
K
K
 
R
I
 
I
A
 
A
Q
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
 
E
T
 
T
V
 
A
V
 
L
A
 
A
A
 
A
L
 
T
S
 
V
E
 
H
G
 
D
K
 
R
D
 
F
E
 
E
L
 
L
V
 
T
G
 
N
E
|
E
S
 
A
A
 
S
D
|
D
T
 
L
L
 
M
Y
 
Y
H
 
H

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
41% identity, 61% coverage: 7:72/109 of query aligns to 106:163/185 of 6j2lB

query
sites
6j2lB
I
 
F
L
 
L
E
 
Y
E
 
Q
L
 
L
Y
 
E
T
 
Q
V
 
L
I
 
L
A
 
A
S
 
E
R
 
R
K
 
K
G
 
Y
T
 
A
D
 
D
P
 
-
D
 
-
K
 
-
S
 
-
Y
 
-
T
 
-
A
 
-
K
 
-
L
 
L
F
 
Y
A
 
A
R
 
S
G
 
G
R
 
T
G
 
K
K
 
R
I
 
I
A
 
A
Q
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
|
E
T
 
T
V
 
A
V
 
L
A
 
A
A
 
A
L
 
T
S
 
V
E
 
H
G
 
D
K
 
R
D
 
F
E
 
E
L
 
L
V
 
T
G
 
N
E
|
E
S
 
A
A
 
S
D
|
D
T
 
L
L
 
M
Y
 
Y
H
 
H

Sites not aligning to the query:

Query Sequence

>WP_011386874.1 NCBI__GCF_000009985.1:WP_011386874.1
MAQDSKILEELYTVIASRKGTDPDKSYTAKLFARGRGKIAQKFGEEAVETVVAALSEGKD
ELVGESADTLYHLLVLWADCGVEPAKVWAELARRTGTSGIDEKKSRAKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory