Comparing WP_011426326.1 NCBI__GCF_000092045.1:WP_011426326.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9A3Q9 Omega-aminotransferase; Beta-alanine--pyruvate aminotransferase; EC 2.6.1.-; EC 2.6.1.18 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see paper)
64% identity, 97% coverage: 9:437/441 of query aligns to 7:435/439 of Q9A3Q9
4b98A The structure of the omega aminotransferase from pseudomonas aeruginosa (see paper)
53% identity, 95% coverage: 10:430/441 of query aligns to 9:430/441 of 4b98A
Q9I700 Beta-alanine--pyruvate aminotransferase; Beta-A--Py AT; Beta-alanine--pyruvate transaminase; Omega-amino acid aminotransferase; Omega-amino acid AT; Omega-amino acid--pyruvate aminotransferase; Omega-APT; EC 2.6.1.18 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
53% identity, 95% coverage: 10:430/441 of query aligns to 16:437/448 of Q9I700
4uhmA Characterization of a novel transaminase from pseudomonas sp. Strain aac (see paper)
51% identity, 95% coverage: 10:430/441 of query aligns to 3:424/435 of 4uhmA
3a8uX Crystal structure of omega-amino acid:pyruvate aminotransferase
48% identity, 97% coverage: 11:437/441 of query aligns to 9:437/441 of 3a8uX
7qx3A Structure of the transaminase tr2e2 with eos (see paper)
37% identity, 93% coverage: 29:440/441 of query aligns to 2:417/422 of 7qx3A
5lh9D Amine transaminase crystal structure from an uncultivated pseudomonas species in the plp-bound (internal aldimine) form
40% identity, 94% coverage: 9:423/441 of query aligns to 7:431/449 of 5lh9D
5lhaA Amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
40% identity, 94% coverage: 9:423/441 of query aligns to 5:429/447 of 5lhaA
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
37% identity, 96% coverage: 17:440/441 of query aligns to 17:445/450 of 6gwiB
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
37% identity, 96% coverage: 17:439/441 of query aligns to 19:445/448 of 6io1B
7qx0B Transaminase structure of plurienzyme (tr2e2) in complex with plp (see paper)
35% identity, 99% coverage: 3:440/441 of query aligns to 6:438/443 of 7qx0B
3i5tA Crystal structure of aminotransferase prk07036 from rhodobacter sphaeroides kd131
37% identity, 91% coverage: 34:434/441 of query aligns to 31:431/444 of 3i5tA
Sites not aligning to the query:
6s54A Transaminase from pseudomonas fluorescens (see paper)
37% identity, 92% coverage: 25:430/441 of query aligns to 28:441/453 of 6s54A
Sites not aligning to the query:
5kr3A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
37% identity, 91% coverage: 29:431/441 of query aligns to 34:444/458 of 5kr3A
5kr5A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
37% identity, 91% coverage: 29:429/441 of query aligns to 31:441/455 of 5kr5A
Sites not aligning to the query:
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
37% identity, 97% coverage: 13:439/441 of query aligns to 12:446/454 of 7ypmA
6fyqA The crystal structure of a new transaminase from the marine bacterium virgibacillus (see paper)
35% identity, 95% coverage: 10:429/441 of query aligns to 7:427/443 of 6fyqA
5ti8B Crystal structure of an aspartate aminotransferase from pseudomonas (see paper)
36% identity, 93% coverage: 29:440/441 of query aligns to 1:379/384 of 5ti8B
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
37% identity, 93% coverage: 29:439/441 of query aligns to 31:446/455 of 7ypnD
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
35% identity, 91% coverage: 29:431/441 of query aligns to 33:445/459 of 5kquC
>WP_011426326.1 NCBI__GCF_000092045.1:WP_011426326.1
MSNRLNAPNDLRAFWMPFTANRQFKKEPRLFVGAKDMYYTTHDGRQVLDGTAGLWCVNAG
HCRPKITEAIREQAGELDYAPAFQLGHPKAFELANRLVDIAPEGMDHVLYTNSGSESVET
ALKVALAYHRVKGNGSRFRLIGRERGYHGVNFGGISVGGIVANRKMFGTLLTGVDHMPHT
HQPGKNNFTRGEPEHGGDIATELERIVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQKL
REICTKHGILLIFDEVITGFGRLGAPFAAQYYDVKPDMITTAKGLTNGVIPMGAVFVTSE
IHDAFMNGPEHMIEFFHGYTYSGNPIASAAALATLDTYKEEGLLTRAAELSDYWADALHS
LRDCPNVIDIRNTGLIGAIELDPIAGEPTKRAFTAFLKAYESGLLIRTTGDIIALSPPLI
IEKQHIDELFGKLRTILQNNI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory