Comparing WP_011428524.1 NCBI__GCF_000092045.1:WP_011428524.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
41% identity, 96% coverage: 17:510/513 of query aligns to 4:494/501 of P04983
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 42% coverage: 23:235/513 of query aligns to 7:215/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 43% coverage: 16:235/513 of query aligns to 1:215/241 of 4u00A
5x40A Structure of a cbio dimer bound with amppcp (see paper)
31% identity, 45% coverage: 15:247/513 of query aligns to 2:231/280 of 5x40A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 46% coverage: 1:234/513 of query aligns to 1:226/378 of P69874
Sites not aligning to the query:
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
31% identity, 44% coverage: 28:254/513 of query aligns to 22:246/265 of P07821
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 43% coverage: 15:235/513 of query aligns to 2:222/648 of P75831
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 41% coverage: 25:235/513 of query aligns to 11:217/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 41% coverage: 25:235/513 of query aligns to 11:217/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 41% coverage: 25:235/513 of query aligns to 11:217/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 41% coverage: 25:235/513 of query aligns to 11:217/242 of 2oljA
3d31A Modbc from methanosarcina acetivorans (see paper)
33% identity, 40% coverage: 32:235/513 of query aligns to 15:207/348 of 3d31A
Sites not aligning to the query:
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
33% identity, 44% coverage: 14:237/513 of query aligns to 1:218/218 of 7w78A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 40% coverage: 30:235/513 of query aligns to 18:220/343 of P30750
Sites not aligning to the query:
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
33% identity, 43% coverage: 14:232/513 of query aligns to 1:213/216 of 7w79A
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
31% identity, 40% coverage: 30:235/513 of query aligns to 19:221/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
31% identity, 40% coverage: 30:235/513 of query aligns to 19:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
31% identity, 40% coverage: 30:235/513 of query aligns to 19:221/344 of 3tuiC
Sites not aligning to the query:
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
29% identity, 42% coverage: 17:232/513 of query aligns to 4:214/257 of 8wm7D
5d3mA Folate ecf transporter: amppnp bound state (see paper)
34% identity, 43% coverage: 17:235/513 of query aligns to 5:222/280 of 5d3mA
>WP_011428524.1 NCBI__GCF_000092045.1:WP_011428524.1
MNHSSDIPSPDAPATPFLSLFGVGKTFPGVVALEGLSLDIVPGEVIGLVGENGAGKSTLM
NILGGVIAPDRGTILLDGAELRHLTVESSIASGIAFVHQELNLFDNLDVAANIFLGREPL
KAGPFKFVDRARLREMVTPLLKRVGAHFSADTPVASLSLAEQQMVEIAKALSIKARLVIF
DEPTSSLPLAETERLLNIIKSLKADGISVIFISHRLHEVECVADRVVVLRDGTLVGTLAK
KDIGHDQMVKLMIGRLLAARTAKPQRSPGPVALKVNGVRTEAYPSRPVDLEIRYGEILGL
AGLVGSGRTELARVLFGIDRSYGGAILQDGRQIAIGSARDAVARGIFLVPEDRKRNGILL
DLPIAQNITLADLPRISSRFMVSAEREIEAAEKQRVRLGIKAPSVSTRTGTLSGGNQQKV
VLAKWLSMSPRVMIFDEPTRGIDIGAKNEIYGMMRALADAGVAILMISSDMEEVIGVSDR
IAVMHEGQIAGILEEDEFSQESVLLLAVGKSVK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory