SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011460067.1 NCBI__GCF_000021925.1:WP_011460067.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
33% identity, 98% coverage: 5:383/385 of query aligns to 113:458/460 of 6u7lA

query
sites
6u7lA
G
 
G
F
 
Y
R
 
R
R
 
N
P
 
A
D
 
D
G
 
G
L
 
S
F
 
V
G
 
G
I
 
T
R
 
K
N
 
N
H
 
L
L
 
L
L
 
G
I
 
I
L
 
T
P
 
T
T
 
S
S
 
V
V
 
H
C
 
C
A
 
V
T
 
A
T
 
G
V
 
V
A
 
V
A
 
D
N
 
Y
I
 
V
A
 
V
A
 
K
-
 
I
-
 
I
-
 
E
-
 
R
-
 
D
-
 
L
-
 
L
-
 
P
-
 
K
-
 
Y
-
 
P
Q
 
N
V
 
V
P
 
D
G
 
G
A
 
V
V
 
V
A
 
G
I
 
L
A
 
N
N
 
H
Q
 
L
H
 
Y
G
 
G
C
 
C
C
 
G
Q
 
A
L
 
P
G
 
A
A
 
A
D
 
V
Y
 
V
E
 
P
Q
 
-
T
 
-
L
 
I
R
 
R
T
 
T
L
 
I
I
 
H
G
 
N
I
 
I
G
 
S
R
 
L
N
 
N
P
 
P
N
 
N
V
 
F
G
 
G
A
 
G
V
 
-
L
 
-
V
 
-
V
 
-
G
 
-
L
 
-
G
 
-
C
 
-
E
 
-
G
 
-
I
 
-
P
 
-
I
 
-
L
 
-
H
 
-
T
 
-
A
 
-
E
 
-
E
 
-
I
 
-
A
 
-
K
 
-
S
 
-
G
 
-
K
 
-
P
 
-
V
 
-
Q
 
E
S
 
V
L
 
M
I
 
V
I
 
I
Q
 
G
E
 
K
H
 
H
G
 
V
G
 
G
T
 
F
L
 
Q
K
 
S
T
 
M
T
 
V
A
 
E
L
 
D
G
 
I
V
 
L
Q
 
Q
V
 
I
A
 
A
A
 
E
Q
 
R
M
 
H
A
 
L
R
 
Q
T
 
K
L
 
L
S
 
N
M
 
Q
L
 
R
K
 
Q
R
 
R
E
 
E
E
 
T
A
 
C
P
 
P
L
 
A
S
 
S
E
 
E
L
 
L
S
 
V
L
 
V
G
 
G
V
 
M
E
x
Q
C
|
C
G
 
G
G
 
G
S
 
S
D
 
D
F
 
A
T
 
F
S
 
S
G
 
G
L
 
V
A
 
T
A
 
A
N
 
N
P
 
P
A
 
A
A
 
V
G
 
G
T
 
Y
A
 
A
S
 
S
D
 
D
L
 
L
V
 
L
V
 
V
K
 
R
A
 
C
G
 
G
G
 
A
T
 
T
A
 
V
M
 
M
L
 
F
S
 
S
E
|
E
T
 
V
T
 
T
E
 
E
F
 
V
I
 
R
G
 
D
A
 
A
E
 
I
H
 
H
V
 
L
L
 
L
A
 
T
K
 
P
R
 
R
A
 
A
K
 
V
S
 
N
P
 
E
E
 
E
V
 
V
A
 
G
A
 
K
K
 
R
L
 
L
L
 
L
G
 
-
I
 
-
V
 
-
K
 
E
E
 
E
T
 
M
E
 
E
L
 
W
R
 
Y
A
 
D
R
 
N
Q
 
Y
L
 
L
H
 
N
V
 
-
D
 
-
L
 
-
R
 
-
D
 
-
G
 
-
Q
 
-
P
 
-
T
 
-
P
 
-
G
 
-
N
 
-
I
 
-
A
 
-
G
 
G
G
 
G
I
 
L
S
 
A
S
 
N
I
 
V
E
 
V
E
 
E
K
 
K
S
 
A
L
 
L
G
 
G
C
 
S
I
 
I
Y
 
A
K
 
K
A
 
S
G
 
G
H
 
K
S
 
S
T
 
A
I
 
I
Q
 
V
D
 
E
I
 
V
L
 
L
A
 
S
Y
 
P
G
 
G
E
 
Q
A
 
R
P
 
P
Q
 
T
G
 
K
K
 
R
G
 
G
L
 
L
Y
 
I
V
 
Y
M
 
A
D
 
A
T
 
T
P
 
P
G
x
A
Q
 
S
D
|
D
V
 
F
E
 
V
S
 
C
M
 
G
I
 
T
G
 
Q
M
 
Q
L
 
V
A
 
A
G
 
S
G
 
G
I
 
I
Q
 
T
I
 
V
I
 
Q
V
 
V
F
 
F
T
 
T
T
 
T
G
 
G
R
 
R
G
 
G
T
 
T
P
 
P
T
 
Y
G
 
G
S
 
L
P
 
M
I
 
A
A
 
V
P
 
P
V
 
V
I
 
I
K
 
K
V
 
M
T
 
A
A
 
T
N
 
R
A
 
T
D
 
E
T
 
L
Y
 
A
L
 
N
N
 
R
M
 
W
A
 
F
D
 
D
N
 
L
I
 
M
D
 
D
L
 
I
D
 
N
L
 
A
S
 
G
P
 
T
I
 
I
L
 
A
S
 
T
G
 
G
A
 
E
E
 
E
T
 
T
I
 
I
E
 
E
D
 
E
S
 
V
G
 
G
R
 
W
R
 
K
I
 
L
F
 
F
K
 
H
E
 
F
I
 
I
I
 
L
E
 
D
V
 
V
A
 
A
N
 
S
G
 
G
-
 
K
K
 
K
L
 
K
T
 
T
K
 
F
S
 
S
E
 
D
S
 
Q
L
 
W
G
 
G
-
 
L
H
 
H
Q
 
N
E
 
Q
F
 
L
G
 
A
I
 
V
F
 
F
R
 
N
I
 
P
G
 
A
P
 
P

Query Sequence

>WP_011460067.1 NCBI__GCF_000021925.1:WP_011460067.1
MNLWGFRRPDGLFGIRNHLLILPTSVCATTVAANIAAQVPGAVAIANQHGCCQLGADYEQ
TLRTLIGIGRNPNVGAVLVVGLGCEGIPILHTAEEIAKSGKPVQSLIIQEHGGTLKTTAL
GVQVAAQMARTLSMLKREEAPLSELSLGVECGGSDFTSGLAANPAAGTASDLVVKAGGTA
MLSETTEFIGAEHVLAKRAKSPEVAAKLLGIVKETELRARQLHVDLRDGQPTPGNIAGGI
SSIEEKSLGCIYKAGHSTIQDILAYGEAPQGKGLYVMDTPGQDVESMIGMLAGGIQIIVF
TTGRGTPTGSPIAPVIKVTANADTYLNMADNIDLDLSPILSGAETIEDSGRRIFKEIIEV
ANGKLTKSESLGHQEFGIFRIGPTF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory