Comparing WP_011460660.1 NCBI__GCF_000021925.1:WP_011460660.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P05654 Aspartate carbamoyltransferase catalytic subunit; Aspartate transcarbamylase; ATCase; EC 2.1.3.2 from Bacillus subtilis (strain 168) (see paper)
44% identity, 94% coverage: 6:299/312 of query aligns to 2:285/304 of P05654
Sites not aligning to the query:
3r7fA Crystal structure of cp-bound aspartate transcarbamoylase from bacillus subtilis (see paper)
44% identity, 94% coverage: 6:299/312 of query aligns to 2:285/291 of 3r7fA
3r7dA Crystal structure of unliganded aspartate transcarbamoylase from bacillus subtilis (see paper)
44% identity, 94% coverage: 6:299/312 of query aligns to 2:285/291 of 3r7dA
3r7lA Crystal structure of pala-bound aspartate transcarbamoylase from bacillus subtilis (see paper)
44% identity, 94% coverage: 6:299/312 of query aligns to 2:285/290 of 3r7lA
6pnzA The structure of the aspartate transcarbamoylase trimer from staphylococcus aureus complexed with pala at 2.27 resolution.
42% identity, 95% coverage: 8:303/312 of query aligns to 4:292/293 of 6pnzA
4bjhB Crystal structure of the aquifex reactor complex formed by dihydroorotase (h180a, h232a) with dihydroorotate and aspartate transcarbamoylase with n-(phosphonacetyl)-l-aspartate (pala) (see paper)
40% identity, 93% coverage: 13:302/312 of query aligns to 9:289/291 of 4bjhB
3d6nB Crystal structure of aquifex dihydroorotase activated by aspartate transcarbamoylase (see paper)
40% identity, 93% coverage: 13:302/312 of query aligns to 9:289/291 of 3d6nB
1ml4A The pala-liganded aspartate transcarbamoylase catalytic subunit from pyrococcus abyssi (see paper)
38% identity, 97% coverage: 3:304/312 of query aligns to 2:305/307 of 1ml4A
5g1nE Aspartate transcarbamoylase domain of human cad bound to pala (see paper)
35% identity, 96% coverage: 6:304/312 of query aligns to 6:305/307 of 5g1nE
P27708 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Homo sapiens (Human) (see 7 papers)
35% identity, 96% coverage: 6:304/312 of query aligns to 1924:2223/2225 of P27708
Sites not aligning to the query:
5g1pA Aspartate transcarbamoylase domain of human cad bound to carbamoyl phosphate (see paper)
34% identity, 96% coverage: 6:304/312 of query aligns to 3:290/292 of 5g1pA
P08955 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Mesocricetus auratus (Golden hamster) (see paper)
35% identity, 96% coverage: 6:304/312 of query aligns to 1924:2223/2225 of P08955
Sites not aligning to the query:
4eknB Structure of the catalytic chain of methanococcus jannaschii aspartate transcarbamoylase in a hexagonal crystal form (see paper)
36% identity, 96% coverage: 6:303/312 of query aligns to 2:300/304 of 4eknB
8bplA Aspartate transcarbamoylase mutant (n2045c, r2238c) from chaetomium thermophilum cad-like bound to carbamoyl phosphate (see paper)
34% identity, 97% coverage: 2:304/312 of query aligns to 12:316/316 of 8bplA
P20054 Multifunctional protein pyr1-3; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Dictyostelium discoideum (Social amoeba)
33% identity, 96% coverage: 6:306/312 of query aligns to 1923:2224/2225 of P20054
Sites not aligning to the query:
Q09794 Multifunctional protein ura1; Pyrimidine-specific carbamoyl phosphate synthase-aspartate carbamoyl transferase; CPSase-ATCase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
32% identity, 97% coverage: 3:305/312 of query aligns to 1934:2239/2244 of Q09794
Sites not aligning to the query:
P05990 Multifunctional protein r; Protein rudimentary; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Drosophila melanogaster (Fruit fly) (see 2 papers)
33% identity, 96% coverage: 6:305/312 of query aligns to 1918:2219/2224 of P05990
Sites not aligning to the query:
P49077 Aspartate carbamoyltransferase, chloroplastic; Aspartate transcarbamylase; ATCase; EC 2.1.3.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
35% identity, 96% coverage: 7:305/312 of query aligns to 86:389/390 of P49077
6ys6B Arabidopsis aspartate transcarbamoylase complex with pala (see paper)
36% identity, 91% coverage: 22:305/312 of query aligns to 23:311/312 of 6ys6B
6ypoA Arabidopsis aspartate transcarbamoylase bound to ump (see paper)
36% identity, 91% coverage: 22:305/312 of query aligns to 23:311/312 of 6ypoA
>WP_011460660.1 NCBI__GCF_000021925.1:WP_011460660.1
MGWSRKDLLHIEDLPAKEIQLILNTAKPMKEIMSRAVKKLPTFRGKSVYNLFFESSTRTR
TSFETAAKILGADTSSLAVAQSSLNKGETLLDTVRTLQAMKPDLVVIRHSSSGAAQFLAK
ELKAGVINAGDGQHEHPTQALLDLYTMQERLGSVEGRKILLVGDILHSRVARSNVWALKN
LGAEVVLVGPPTLLPPEIKSWGVKTTFNLDEELPGSDVIMALRLQLERQQSGLLPSLREY
SQLYGITAERVKKTGKQTLIMHPGPVNRGVEIESSIANSSQSVIEEQVTNGVAVRMAIMY
LLLGGGTAHVVD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory