Comparing WP_011607465.1 NCBI__GCF_000058485.1:WP_011607465.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6knhC Crystal structure of sbnh in complex with citrate, a plp-dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
36% identity, 71% coverage: 130:465/476 of query aligns to 64:383/384 of 6knhC
6knkA Crystal structure of sbnh in complex with citryl-diaminoethane (see paper)
35% identity, 71% coverage: 130:467/476 of query aligns to 65:383/383 of 6knkA
6kniA Crystal structure of sbnh in complex with the cofactor plp, a plp- dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
35% identity, 71% coverage: 130:467/476 of query aligns to 64:381/381 of 6kniA
Sites not aligning to the query:
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
34% identity, 70% coverage: 132:464/476 of query aligns to 66:388/412 of 7ru7A
Sites not aligning to the query:
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
29% identity, 71% coverage: 137:474/476 of query aligns to 68:386/405 of B4XMC6
Sites not aligning to the query:
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
28% identity, 70% coverage: 137:469/476 of query aligns to 66:374/394 of 3c5qA
Sites not aligning to the query:
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
26% identity, 70% coverage: 132:465/476 of query aligns to 86:405/434 of 1twiA
Sites not aligning to the query:
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
26% identity, 70% coverage: 132:465/476 of query aligns to 86:405/434 of 1tufA
Sites not aligning to the query:
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
26% identity, 70% coverage: 132:465/476 of query aligns to 90:409/438 of Q58497
Sites not aligning to the query:
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
26% identity, 70% coverage: 132:465/476 of query aligns to 77:392/418 of 4xg1B
Sites not aligning to the query:
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
27% identity, 71% coverage: 132:468/476 of query aligns to 63:365/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
27% identity, 71% coverage: 132:468/476 of query aligns to 62:364/385 of 2yxxA
Sites not aligning to the query:
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
25% identity, 70% coverage: 132:465/476 of query aligns to 72:367/393 of 4xg1A
Sites not aligning to the query:
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
30% identity, 51% coverage: 206:446/476 of query aligns to 138:378/419 of 1ko0A
Sites not aligning to the query:
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
30% identity, 51% coverage: 206:446/476 of query aligns to 139:379/420 of P00861
Sites not aligning to the query:
1knwA Crystal structure of diaminopimelate decarboxylase
30% identity, 51% coverage: 206:446/476 of query aligns to 138:378/421 of 1knwA
Sites not aligning to the query:
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
24% identity, 90% coverage: 22:450/476 of query aligns to 23:383/422 of 6n2aA
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
28% identity, 67% coverage: 133:450/476 of query aligns to 89:409/446 of 1hkvA
Sites not aligning to the query:
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
28% identity, 67% coverage: 133:450/476 of query aligns to 90:410/447 of P9WIU7
Sites not aligning to the query:
7kh2D Structure of n-citrylornithine decarboxylase bound with plp (see paper)
21% identity, 65% coverage: 159:468/476 of query aligns to 103:402/415 of 7kh2D
Sites not aligning to the query:
>WP_011607465.1 NCBI__GCF_000058485.1:WP_011607465.1
MDLPPSAAPLHALPAGRLPLAVLAAVRDRPAGAAEFSAYLYDPTVAARNAAALRGCLPGW
AELCFAVKANGFPPVLDALLRGAAAAGTPADIQLADIRAHGPGAGGGPDPSVGPGASGGP
DPRVCGHGGVDGFEVSSVGETRLALAAYGRVAPARSPYLVASGPAKSSTLLTALVEAGVS
IVNVESPGELRRLEAVAARFGRRVTVAVRVNPARVALAGSLQMGGRPSAFGVPESEVPAV
LDLARRLPHLDVAGFHVHAVSGNLDAAAHLDYVRWCLEFAERTAADAGIDLRVVDVGGGL
GVPFEPDRRGERPFDLDRFGEGLARLPVPPGVRMIIEPGRLLVADCGWYAAEVIDVKRSY
GTDFVVLRGGIHHFALPTSWEIVHNFAVVAGPTSTAAEDKGVDTAGRPVTVVGELCTPED
TLARDITVGPVRPGDVVVFPMAGAYGYEFALADFLGHPRPARVVLGESVDRGPRDA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory