Comparing WP_011610785.1 NCBI__GCF_000014265.1:WP_011610785.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4mcaA Crystal structure of glycerol dehydrogenase from serratia to 1.9a
33% identity, 94% coverage: 14:368/377 of query aligns to 1:354/367 of 4mcaA
Q9WYQ4 Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
33% identity, 90% coverage: 14:354/377 of query aligns to 1:338/364 of Q9WYQ4
1kq3A Crystal structure of a glycerol dehydrogenase (tm0423) from thermotoga maritima at 1.5 a resolution (see paper)
33% identity, 90% coverage: 14:354/377 of query aligns to 2:339/364 of 1kq3A
8gobA Crystal structure of glycerol dehydrogenase in the presence of NAD+ (see paper)
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of 8gobA
8goaA Crystal structure of glycerol dehydrogenase in the absence of NAD+ (see paper)
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of 8goaA
5zxlA Structure of glda from e.Coli (see paper)
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of 5zxlA
P0A9S5 Glycerol dehydrogenase; GDH; GLDH; (R)-aminopropanol dehydrogenase; 1,2-propanediol dehydrogenase; D-1-amino-2-propanol oxidoreductase; EC 1.1.1.6; EC 1.1.1.75 from Escherichia coli (strain K12) (see paper)
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of P0A9S5
8k1hA Crystal structure of ethylene glycol-bound glycerol dehydrogenase from klebsiella pneumoniae
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of 8k1hA
8k1gA Crystal structure of ethylene glycol-bound glycerol dehydrogenase from klebsiella pneumoniae
34% identity, 92% coverage: 20:367/377 of query aligns to 7:353/367 of 8k1gA
P32816 Glycerol dehydrogenase; GDH; GLDH; GlyDH; EC 1.1.1.6 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 2 papers)
31% identity, 93% coverage: 19:368/377 of query aligns to 8:356/370 of P32816
1jq5A Bacillus stearothermophilus glycerol dehydrogenase complex with NAD+ (see paper)
31% identity, 93% coverage: 19:368/377 of query aligns to 7:355/366 of 1jq5A
1ta9B Crystal structure of glycerol dehydrogenase from schizosaccharomyces pombe
32% identity, 92% coverage: 20:366/377 of query aligns to 12:358/394 of 1ta9B
5xn8A Structure of glycerol dehydrogenase crystallised as a contaminant
30% identity, 94% coverage: 14:368/377 of query aligns to 1:354/365 of 5xn8A
3uhjA Crystal structure of a probable glycerol dehydrogenase from sinorhizobium meliloti 1021
32% identity, 77% coverage: 69:357/377 of query aligns to 51:338/357 of 3uhjA
O13702 Glycerol dehydrogenase 1; GDH; GLDH; EC 1.1.1.6 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
32% identity, 92% coverage: 20:366/377 of query aligns to 68:414/450 of O13702
1jqaA Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol (see paper)
31% identity, 93% coverage: 19:368/377 of query aligns to 6:350/361 of 1jqaA
4rgqB Crystal structure of the methanocaldococcus jannaschii g1pdh with NADPH and dhap (see paper)
27% identity, 62% coverage: 99:330/377 of query aligns to 68:294/333 of 4rgqB
Sites not aligning to the query:
4rgvA Crystal structure of the methanocaldococcus jannaschii g1pdh (see paper)
26% identity, 69% coverage: 71:330/377 of query aligns to 40:289/328 of 4rgvA
5fb3F Structure of glycerophosphate dehydrogenase in complex with NADPH (see paper)
29% identity, 64% coverage: 93:332/377 of query aligns to 64:305/337 of 5fb3F
Sites not aligning to the query:
Q9YER2 Glycerol-1-phosphate dehydrogenase [NAD(P)+]; G1P dehydrogenase; G1PDH; Gro1PDH; Enantiomeric glycerophosphate synthase; sn-glycerol-1-phosphate dehydrogenase; EC 1.1.1.261 from Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (see paper)
27% identity, 45% coverage: 21:189/377 of query aligns to 11:178/352 of Q9YER2
Sites not aligning to the query:
>WP_011610785.1 NCBI__GCF_000014265.1:WP_011610785.1
MIKSTHISQTATTLLSLNIAPTQIIRGKNALAQSGEAIARIGHHPLIVGSPRSLNIILPH
LQPLLQIHNLKFTQANYGSDCSETSLANLSQAVATQKPDLIIGIGGGKALDTAKLLAYKC
HLPIITIPTSAATCAAWTALSNIYSDQGAFLYDISLAKCPELLILDYGIIKTGPSRTLVA
GIGDAIAKWYEASVSSGHSESTMIISAVQQARVLRDILFQKSTFALEQPGGETWQEVVDA
TVLLAGLIGSIGGAQCRTVAAHAIHNGLTHLSASHEKLHGEKVAYGILVQLRLEEMLQSN
QLAATARQQLLKFYNQIGLPKSLNDLGLKEITLSELRHVAEVACHPNSDIHRLPFRIIPE
QLVAAMVSTTVPLELEK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory