SitesBLAST
Comparing WP_011612989.1 NCBI__GCF_000014265.1:WP_011612989.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 19 hits to proteins with known functional sites (download)
8r06A Crystal structure of thermoanaerobacterium xylanolyticum gh116 beta- glucosidase with a covalently bound cyclophellitol aziridine (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 6:767/771 of 8r06A
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding (1~{R},2~{S},3~{S},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), T559 (= T578), E745 (= E786), R754 (= R795), Y758 (= Y799)
5ncxA Crystal structure of thermoanaerobacterium xylolyticum gh116 beta- glucosidase with an covalent inhibitor
41% identity, 98% coverage: 9:808/816 of query aligns to 6:767/771 of 5ncxA
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding ~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]pentanamide: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), D561 (= D580), E745 (= E786), R754 (= R795), Y758 (= Y799)
7w2tA Crystal structure of txgh116 e730q mutant from thermoanaerobacterium xylanolyticum with glucose
41% identity, 98% coverage: 9:808/816 of query aligns to 8:769/773 of 7w2tA
- binding beta-D-glucopyranose: E411 (= E428), Y415 (= Y432), D422 (= D439), H477 (= H494), Y493 (≠ T510), T561 (= T578), W702 (= W744), E747 (= E786), R756 (= R795)
- binding calcium ion: D545 (= D562), D547 (= D564), D549 (= D566), I551 (= I568), D553 (≠ E570)
8jboA Crystal structure of txgh116 from thermoanaerobacterium xylanolyticum with isofagomine (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 8jboA
- binding calcium ion: P370 (= P391), D371 (≠ N392), D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding 5-hydroxymethyl-3,4-dihydroxypiperidine: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), W499 (= W518), T559 (= T578), E745 (= E786), R754 (= R795)
5bx4A Crystal structure of thermoanaerobacterium xylanolyticum gh116 beta- glucosidase with glucoimidazole (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 5bx4A
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding glucoimidazole: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), E745 (= E786), R754 (= R795)
5bx3A Crystal structure of thermoanaerobacterium xylanolyticum gh116 beta- glucosidase with deoxynojirimycin (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 5bx3A
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding 1-deoxynojirimycin: E409 (= E428), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), D561 (= D580), E745 (= E786), R754 (= R795)
5bx2A Crystal structure of thermoanaerobacterium xylanolyticum gh116 beta- glucosidase with 2-deoxy-2-fluoroglucoside (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 5bx2A
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding 2-deoxy-2-fluoro-alpha-D-glucopyranose: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), E745 (= E786), R754 (= R795)
7w2wA Crystal structure of txgh116 r786k mutant from thermoanaerobacterium xylanolyticum with glucose
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/771 of 7w2wA
- binding beta-D-glucopyranose: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), D561 (= D580), W700 (= W744), E745 (= E786)
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding alpha-D-glucopyranose: E409 (= E428), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), W700 (= W744), E745 (= E786), Y758 (= Y799)
5npfA Crystal structure of txgh116 (beta-glucosidase from thermoanaerobacterium xylolyticum) in complex with beta cyclophellitol cyclosulfate probe me594 (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:761/763 of 5npfA
- binding [(1~{R},2~{R},3~{R},4~{S},5~{R})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl] hydrogen sulfate: E403 (= E428), Y407 (= Y432), D414 (= D439), H469 (= H494), Y485 (≠ T510), T553 (= T578), D555 (= D580), E739 (= E786), R748 (= R795)
- binding calcium ion: D537 (= D562), D539 (= D564), D541 (= D566), I543 (= I568), D545 (≠ E570)
8i5sA Crystal structure of txgh116 d593n acid/base mutant from thermoanaerobacterium xylanolyticum with 2-deoxy-2-fluoroglucoside (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 8i5sA
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding 2-deoxy-2-fluoro-alpha-D-glucopyranose: E409 (= E428), Y413 (= Y432), D420 (= D439), H475 (= H494), T559 (= T578), E745 (= E786), R754 (= R795)
- binding 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside: G257 (= G277), D258 (≠ T278), S260 (≠ E280), D261 (= D281), H264 (= H284), Q443 (≠ A462), D446 (≠ R465), T447 (≠ A466), L477 (= L496), W485 (= W504), I488 (≠ T507)
5o0sA Crystal structure of txgh116 (beta-glucosidase from thermoanaerobacterium xylolyticum) in complex with unreacted beta cyclophellitol cyclosulfate probe me711 (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:766/768 of 5o0sA
- binding (3~{a}~{S},4~{R},5~{S},6~{R},7~{R},7~{a}~{R})-7-(hydroxymethyl)-2,2-bis(oxidanylidene)-3~{a},4,5,6,7,7~{a}-hexahydrobenzo[d][1,3,2]dioxathiole-4,5,6-triol: E408 (= E428), Y412 (= Y432), D419 (= D439), H474 (= H494), Y490 (≠ T510), T558 (= T578), D560 (= D580), E744 (= E786), R753 (= R795)
- binding calcium ion: D542 (= D562), D544 (= D564), D546 (= D566), I548 (= I568), D550 (≠ E570)
7dktA Crystal structure of txgh116 e441a nucleophile mutant from thermoanaerobacterium xylanolyticum with alpha-glucosyl fluoride (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 7dktA
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding alpha-D-glucopyranosyl fluoride: Y413 (= Y432), D420 (= D439), H475 (= H494), Y491 (≠ T510), T559 (= T578), W700 (= W744), E745 (= E786), R754 (= R795), Y758 (= Y799)
- binding glycerol: W14 (= W15), T15 (≠ N16), E20 (≠ L21), I151 (≠ L152), Y153 (≠ G154), N154 (= N155), K166 (≠ E167), M355 (≠ N376), D357 (≠ E378), N402 (≠ Y421), M404 (≠ Q423), F411 (≠ L430), D412 (= D431), Y413 (= Y432), Q439 (≠ S458), R442 (≠ V461), Q443 (≠ A462), D446 (≠ R465), D452 (= D471), Y481 (≠ N500), I486 (≠ E505), K487 (≠ M506), I488 (≠ T507), T534 (≠ E553), D537 (≠ A556), D561 (= D580), W563 (= W582), S564 (≠ Q583), F622 (≠ L666), S626 (= S670), H628 (vs. gap), D690 (≠ E733), S692 (≠ P735), Y732 (= Y776), K734 (vs. gap)
7dksA Crystal structure of txgh116 e441a nucleophile mutant from thermoanaerobacterium xylanolyticum (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 8:767/769 of 7dksA
- binding calcium ion: D543 (= D562), D545 (= D564), D547 (= D566), I549 (= I568), D551 (≠ E570)
- binding glycerol: K166 (≠ E167), D357 (≠ E378), N402 (≠ Y421), D412 (= D431), Y413 (= Y432), Q439 (≠ S458), R442 (≠ V461), D446 (≠ R465), Y481 (≠ N500), W493 (≠ Y512), T559 (= T578), D561 (= D580), D561 (= D580), W563 (= W582), S564 (≠ Q583), F622 (≠ L666), S626 (= S670), H628 (vs. gap), D690 (≠ E733), S692 (≠ P735), W700 (= W744), E745 (= E786), R754 (= R795)
5ostA Beta-glucosidase from thermoanaerobacterium xylolyticum gh116 in complex with gluco-1h-imidazole (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 4:760/762 of 5ostA
- binding (4~{S},5~{S},6~{R},7~{R})-7-(hydroxymethyl)-4,5,6,7-tetrahydro-1~{H}-benzimidazole-4,5,6-triol: E402 (= E428), Y406 (= Y432), D413 (= D439), H468 (= H494), Y484 (≠ T510), T552 (= T578), D554 (= D580), E738 (= E786), R747 (= R795)
- binding calcium ion: D536 (= D562), D538 (= D564), D540 (= D566), I542 (= I568), D544 (≠ E570)
5fjsA Bacterial beta-glucosidase reveals the structural and functional basis of genetic defects in human glucocerebrosidase 2 (gba2) (see paper)
41% identity, 98% coverage: 9:808/816 of query aligns to 4:729/733 of 5fjsA
5fjsB Bacterial beta-glucosidase reveals the structural and functional basis of genetic defects in human glucocerebrosidase 2 (gba2) (see paper)
40% identity, 98% coverage: 9:808/816 of query aligns to 5:698/702 of 5fjsB
Q7KT91 Non-lysosomal glucosylceramidase; NLGase; EC 3.2.1.45 from Drosophila melanogaster (Fruit fly) (see paper)
31% identity, 85% coverage: 123:816/816 of query aligns to 222:944/948 of Q7KT91
- S667 (vs. gap) modified: Phosphoserine
- S669 (vs. gap) modified: Phosphoserine
Sites not aligning to the query:
- 214 modified: Phosphoserine
8ic7A Exo-beta-d-arabinofuranosidase exoma2 from microbacterium arabinogalactanolyticum in complex with beta-d-arabinofuranose (see paper)
26% identity, 35% coverage: 527:810/816 of query aligns to 505:771/853 of 8ic7A
- binding beta-D-arabinofuranose: T553 (= T578), D555 (= D580), R680 (vs. gap), W712 (= W744), E755 (≠ V790), C756 (≠ M791), R762 (= R801)
- binding magnesium ion: D539 (= D562), D541 (= D564), D543 (= D566), L545 (≠ I568), D547 (≠ E570)
Sites not aligning to the query:
8ic6B Exo-beta-d-arabinanase exoma2 from microbacterium arabinogalactanolyticum in complex with tris (see paper)
26% identity, 35% coverage: 527:810/816 of query aligns to 506:772/855 of 8ic6B
Sites not aligning to the query:
Query Sequence
>WP_011612989.1 NCBI__GCF_000014265.1:WP_011612989.1
MNQQNPIPNIPAISWNRPIGLDWDKPYTVRYSSNIDDGPWHGMPLGGFGAGATGRSPRGD
FNLWHLDGGEHIYQNLPACQFSVFEETKGQKQAYALSTELPTDGSLSAWQWYPREKAGLK
TGTYHALYPRSWFVYENVFTAQLSCEQFSPILAGNYQETSYPIAIFEWTAHNPTDEAITL
SIMLSWQNTVGWFTNSVKTPEVRVRDDGSPVYEYKPRWGESTDNFNLLVEDFHRIGCTMT
KLSIADEPAEGEGQMAIATFINAGMEVFYHTRWNPTGTGEDIWHYFALDGSLIDEENELP
ATEGEQIGVAISVRFTIRPGKNRKIPFFLVWDLPVTDFGNGVSYYRRYTDFYGRNGKNAW
SMIRTAMKHYQTWRENIEAWQNPILQREDLPNWLKMALLNELYDLTSGGTIWAAASDSAP
YGQFAVLECLDYRWYESLDVRLYGSFGLLILWPELEKSVLVAFARAVSTADDTLRIIGYN
QVSAVRKVAGATPHDLGAPNEHPWEMTNYTSYQDCNQWKDLSSDFVLQVYRDFLLTGADD
YEFLWQSWSAITETLAYLKGFDKDNDGIPENEGAPDQTFDDWQLRGVSAYCGGLWLAALE
AAIAIGKVLIEHPREIPYYPPKGFYSEVDKNSVDAINNQVYLYQGWLKKGLPIYQEKLWN
GEYYRLDSESNSEVVMADQLSGQFYAKLLNLEDIVPAECALSALKTVYNSCFKNFHNGKF
GAANGVLPDGSPENPNATHPLEVWTGINFGLAAFMVQIGMKKEALEITEVVVGQIYENGL
QFRTPEAITVMGTFRASHYLRAMAIWAIYLVIEAKR
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory