Comparing WP_011650009.1 NCBI__GCF_000009265.1:WP_011650009.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 18 hits to proteins with known functional sites (download)
7x0rB Crystal structure of substrate binding protein lbp complexed wtih guanosine from clostridium thermocellum (see paper)
34% identity, 90% coverage: 23:319/330 of query aligns to 4:294/313 of 7x0rB
Sites not aligning to the query:
2fqyA Pnra from treponema pallidum complexed with adenosine. (see paper)
33% identity, 84% coverage: 27:302/330 of query aligns to 7:291/316 of 2fqyA
2fqxA Pnra from treponema pallidum complexed with guanosine (see paper)
33% identity, 84% coverage: 27:302/330 of query aligns to 7:291/316 of 2fqxA
2fqwA Pnra from treponema pallidum as purified from e. Coli (bound to inosine) (see paper)
33% identity, 84% coverage: 27:302/330 of query aligns to 7:291/316 of 2fqwA
P29724 Membrane lipoprotein TmpC; Membrane protein C; 35 kDa antigen; Lipoprotein TpN35; Purine nucleoside receptor A; PnrA from Treponema pallidum (strain Nichols) (see 2 papers)
33% identity, 84% coverage: 27:302/330 of query aligns to 44:328/353 of P29724
Sites not aligning to the query:
6shuA Borrelia burgdorferi bmpd nucleoside binding protein bound to adenosine (see paper)
32% identity, 86% coverage: 36:319/330 of query aligns to 17:302/316 of 6shuA
6yagA Crystal structure of pnra from s. Pneumoniae in complex with thymidine (see paper)
32% identity, 89% coverage: 26:319/330 of query aligns to 21:327/329 of 6yagA
6yabAAA Lipoprotein (see paper)
32% identity, 89% coverage: 26:319/330 of query aligns to 20:326/329 of 6yabAAA
6ya3A Crystal structure of pnra from s. Pneumoniae in complex with guanosine (see paper)
32% identity, 89% coverage: 26:319/330 of query aligns to 22:328/331 of 6ya3A
6ya4A Crystal structure of pnra from s. Pneumoniae in complex with cytidine (see paper)
32% identity, 89% coverage: 26:319/330 of query aligns to 23:329/332 of 6ya4A
6y9uA Crystal structure of pnra from s. Pneumoniae in complex with adenosine (see paper)
32% identity, 89% coverage: 26:319/330 of query aligns to 23:329/332 of 6y9uA
4pevA Crystal structure of abc transporter system solute-binding proteins from aeropyrum pernix k1
30% identity, 75% coverage: 27:275/330 of query aligns to 6:270/370 of 4pevA
6piiC The evolving story of atzt, a periplasmic binding protein (see paper)
31% identity, 55% coverage: 70:252/330 of query aligns to 52:228/331 of 6piiC
Sites not aligning to the query:
6pi6A The evolving story of atzt, a periplasmic binding protein (see paper)
31% identity, 55% coverage: 70:252/330 of query aligns to 52:228/333 of 6pi6A
Sites not aligning to the query:
6piiA The evolving story of atzt, a periplasmic binding protein (see paper)
31% identity, 55% coverage: 70:252/330 of query aligns to 55:231/336 of 6piiA
Sites not aligning to the query:
3s99A Crystal structure of a basic membrane lipoprotein from brucella melitensis, iodide soak
28% identity, 55% coverage: 70:252/330 of query aligns to 51:227/330 of 3s99A
Sites not aligning to the query:
Q56328 ABC transporter riboflavin-binding protein RfuA; Membrane lipoprotein TpN38(b) from Treponema pallidum (strain Nichols) (see paper)
25% identity, 68% coverage: 77:300/330 of query aligns to 90:320/343 of Q56328
Sites not aligning to the query:
4iilA Crystal structure of rfua (tp0298) of t. Pallidum bound to riboflavin (see paper)
25% identity, 68% coverage: 77:300/330 of query aligns to 63:293/314 of 4iilA
Sites not aligning to the query:
>WP_011650009.1 NCBI__GCF_000009265.1:WP_011650009.1
MKKSLLTLFAVAAMSTTALAADVKPALVYGTGGKFDKSFNEAAYNGAEKFKAETGIAYRD
FEPTGDTQGEQAIRNFASRGFNPVVAVSFAWTSAIEKVAAEFPDTKFIIVDSVVDKPNVR
SVVYKEEEGSYLVGVLAGMASKTGKVGFVGGMDIPLIRKFECGYEQGARSVKADIEVFQN
MTGTTGAAWNDPVRGGELTKNQIDQGADVVYAAAGATGLGVLQTAADNKKLSIGVDSNQN
HLHPGSVLTSMVKRVDLAVYNAYNDTKNDKFTAGVQALGVKEDGVGAAIDDNNKSLITPE
MQAAVDKAKADIIAGTIKVHDYTSDNACPK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory