SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011651799.1 NCBI__GCF_000009265.1:WP_011651799.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
38% identity, 42% coverage: 169:330/384 of query aligns to 12:171/214 of 4ymwC

query
sites
4ymwC
T
 
T
P
 
P
L
 
L
W
 
F
-
 
I
G
 
S
G
 
G
L
 
L
M
 
I
V
 
M
T
 
T
L
 
L
V
 
K
L
 
L
S
 
T
F
 
F
V
 
L
G
 
A
I
 
V
A
 
T
V
 
I
S
 
G
L
 
V
P
 
L
V
 
M
G
 
G
I
 
L
L
 
F
L
 
I
A
 
A
L
 
L
G
 
M
R
 
K
R
 
M
S
 
S
R
 
S
M
 
I
P
 
K
V
 
P
I
 
I
R
 
K
M
 
L
L
 
V
C
 
A
V
 
S
T
 
S
F
 
Y
I
 
I
E
 
E
V
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
 
P
L
 
L
I
 
L
T
 
V
V
 
Q
L
 
L
F
 
L
M
 
L
A
 
I
S
 
Y
V
 
N
M
 
G
L
 
L
P
 
M
L
 
Q
F
 
F
L
 
-
P
 
-
T
 
-
G
 
G
W
 
M
N
 
N
V
 
I
D
 
P
K
 
A
L
 
F
L
 
T
R
 
A
A
 
G
L
 
V
I
 
S
G
 
A
V
 
L
S
 
A
I
 
I
F
x
N
T
 
S
S
 
S
A
 
A
Y
|
Y
M
 
V
A
 
A
E
 
E
V
 
I
I
 
I
R
 
R
G
 
A
G
 
G
L
 
I
Q
 
Q
A
 
A
I
 
V
P
 
D
K
 
P
G
 
G
Q
 
Q
F
 
N
E
 
E
G
 
A
A
 
A
D
 
R
S
 
S
L
 
L
G
 
G
L
 
M
G
 
T
Y
 
H
W
 
A
Q
 
M
K
 
A
T
 
M
R
 
R
L
 
Y
I
 
V
I
 
I
M
 
I
P
 
P
Q
 
Q
A
 
A
I
 
I
K
 
K
L
 
N
V
 
I
I
 
L
P
 
P
S
 
A
I
 
L
V
 
G
N
 
N
T
x
E
F
 
F
I
 
I
G
 
V
T
 
M
F
 
L
K
 
K
D
x
E
T
 
S
S
 
A
L
 
I
V
 
V
T
 
S
I
 
V
I
 
I
G
 
G
M
 
F
F
 
A
D
 
D
L
 
L

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
38% identity, 42% coverage: 169:330/384 of query aligns to 12:171/215 of 4ymtC

query
sites
4ymtC
T
 
T
P
 
P
L
 
L
W
 
F
-
 
I
G
 
S
G
 
G
L
 
L
M
 
I
V
 
M
T
 
T
L
 
L
V
 
K
L
 
L
S
 
T
F
 
F
V
 
L
G
 
A
I
 
V
A
 
T
V
 
I
S
 
G
L
 
V
P
 
L
V
 
M
G
 
G
I
 
L
L
 
F
L
 
I
A
 
A
L
 
L
G
 
M
R
 
K
R
 
M
S
 
S
R
 
S
M
 
I
P
 
K
V
 
P
I
 
I
R
 
K
M
 
L
L
 
V
C
 
A
V
 
S
T
 
S
F
 
Y
I
 
I
E
 
E
V
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
|
P
L
|
L
I
 
L
T
 
V
V
 
Q
L
 
L
F
 
L
M
 
L
A
 
I
S
 
Y
V
 
N
M
 
G
L
 
L
P
 
M
L
 
Q
F
 
F
L
 
-
P
 
-
T
 
-
G
 
G
W
 
M
N
 
N
V
 
I
D
 
P
K
 
A
L
 
F
L
 
T
R
 
A
A
 
G
L
 
V
I
 
S
G
 
A
V
 
L
S
 
A
I
 
I
F
x
N
T
 
S
S
 
S
A
 
A
Y
|
Y
M
 
V
A
 
A
E
 
E
V
 
I
I
 
I
R
 
R
G
 
A
G
 
G
L
 
I
Q
 
Q
A
 
A
I
 
V
P
 
D
K
 
P
G
 
G
Q
 
Q
F
 
N
E
 
E
G
 
A
A
 
A
D
 
R
S
 
S
L
 
L
G
 
G
L
 
M
G
 
T
Y
 
H
W
 
A
Q
 
M
K
 
A
T
 
M
R
 
R
L
 
Y
I
 
V
I
 
I
M
 
I
P
 
P
Q
 
Q
A
 
A
I
 
I
K
 
K
L
 
N
V
 
I
I
 
L
P
 
P
S
 
A
I
 
L
V
 
G
N
 
N
T
x
E
F
 
F
I
 
I
G
 
V
T
x
M
F
 
L
K
|
K
D
x
E
T
 
S
S
 
A
L
 
I
V
 
V
T
 
S
I
 
V
I
 
I
G
 
G
M
 
F
F
 
A
D
 
D
L
 
L

Query Sequence

>WP_011651799.1 NCBI__GCF_000009265.1:WP_011651799.1
MSVADKPFVRTSILAAEPPPPGERGAVAWIRRNLLATPKDVILTILALALIAWAVPHLVN
WLFIQAVWSGPDRTFCATTLQGGIQPDGWSGACWAFISAKYDQFIFGRYPLGERWRPAIV
GILFILLLVPMLIPSAPRKGLNAILLFAVLPVIAFWLLHGGFGLEVVETPLWGGLMVTLV
LSFVGIAVSLPVGILLALGRRSRMPVIRMLCVTFIEVIRGVPLITVLFMASVMLPLFLPT
GWNVDKLLRALIGVSIFTSAYMAEVIRGGLQAIPKGQFEGADSLGLGYWQKTRLIIMPQA
IKLVIPSIVNTFIGTFKDTSLVTIIGMFDLLGIVKLNFSDANWASAVTPITGLIFAGFIF
WLFCFGMSRYSGFMERHLDTGHKR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory