Comparing WP_011655170.1 NCBI__GCF_000009265.1:WP_011655170.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
42% identity, 80% coverage: 20:258/299 of query aligns to 371:606/611 of 8j5qD
Sites not aligning to the query:
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
42% identity, 80% coverage: 20:258/299 of query aligns to 371:606/608 of 8j5tD
Sites not aligning to the query:
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
42% identity, 80% coverage: 20:258/299 of query aligns to 371:606/608 of 8j5sD
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
38% identity, 84% coverage: 20:270/299 of query aligns to 18:270/310 of 4fwiB
Sites not aligning to the query:
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
39% identity, 79% coverage: 20:254/299 of query aligns to 19:258/326 of Q8RDH4
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 91% coverage: 5:276/299 of query aligns to 1:265/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
31% identity, 91% coverage: 5:276/299 of query aligns to 2:266/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
31% identity, 91% coverage: 5:276/299 of query aligns to 2:266/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
31% identity, 91% coverage: 5:276/299 of query aligns to 2:266/344 of 6cvlD
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
34% identity, 85% coverage: 5:258/299 of query aligns to 3:251/253 of 7z15I
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
34% identity, 84% coverage: 5:254/299 of query aligns to 3:247/250 of 7z18I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
34% identity, 84% coverage: 5:254/299 of query aligns to 3:247/250 of 7z16I
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
33% identity, 85% coverage: 6:259/299 of query aligns to 7:234/353 of 1vciA
1g291 Malk (see paper)
32% identity, 88% coverage: 11:274/299 of query aligns to 9:273/372 of 1g291
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
33% identity, 79% coverage: 20:255/299 of query aligns to 17:247/375 of 2d62A
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
32% identity, 84% coverage: 5:256/299 of query aligns to 3:264/330 of P0AAH4
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
35% identity, 74% coverage: 1:221/299 of query aligns to 1:216/233 of P75957
7mdyC Lolcde nucleotide-bound
35% identity, 73% coverage: 5:221/299 of query aligns to 2:213/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
35% identity, 73% coverage: 5:221/299 of query aligns to 2:213/222 of 7arlD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 79% coverage: 20:254/299 of query aligns to 13:239/241 of 4u00A
Sites not aligning to the query:
>WP_011655170.1 NCBI__GCF_000009265.1:WP_011655170.1
MTDAILALDTVTKTFGHGSGAVHAARAISFSLHAGRALALVGESGSGKTTCARMAMREYL
PTSGRILYKGRPVEAAKSAEIARYRRSVQMIFQDPFASLNPAHTIAHHLRRPLKLHRPEI
KGAEIDVAVRELLQRVRLDPDLVAPKYPHELSGGQRQRVNIARALAVKPEVIVADEPTSM
LDVSVRLGVLNLLNEMKQEMNLGLLYITHDIATARYVAEDIAVMYAGQIVEWGSVAKVID
NPLHPYTRLLLSAVPDPEVRFDDPKARLRPEEVEDIRRRSAVPQDEIIEMEQDHFMRMI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory