Comparing WP_011735869.1 NCBI__GCF_000015045.1:WP_011735869.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
32% identity, 95% coverage: 9:425/439 of query aligns to 10:409/420 of P00861
1knwA Crystal structure of diaminopimelate decarboxylase
32% identity, 95% coverage: 9:425/439 of query aligns to 9:408/421 of 1knwA
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
32% identity, 95% coverage: 9:425/439 of query aligns to 9:408/419 of 1ko0A
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
26% identity, 95% coverage: 19:433/439 of query aligns to 6:382/385 of 2yxxA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
27% identity, 93% coverage: 19:425/439 of query aligns to 7:375/386 of Q9X1K5
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
30% identity, 94% coverage: 21:434/439 of query aligns to 9:398/405 of B4XMC6
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
30% identity, 95% coverage: 19:434/439 of query aligns to 21:413/418 of 4xg1B
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
30% identity, 94% coverage: 21:434/439 of query aligns to 7:390/394 of 3c5qA
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
27% identity, 95% coverage: 16:434/439 of query aligns to 32:442/443 of 5x7mA
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
27% identity, 95% coverage: 16:434/439 of query aligns to 32:442/442 of 5x7nA
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
28% identity, 98% coverage: 4:434/439 of query aligns to 1:388/393 of 4xg1A
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
28% identity, 96% coverage: 16:435/439 of query aligns to 29:446/447 of P9WIU7
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
28% identity, 96% coverage: 16:435/439 of query aligns to 28:445/446 of 1hkvA
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
24% identity, 97% coverage: 11:435/439 of query aligns to 3:411/412 of 7ru7A
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 24:428/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 24:428/434 of 1twiA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 28:432/438 of Q58497
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
24% identity, 91% coverage: 26:425/439 of query aligns to 31:410/422 of 6n2aA
6knhC Crystal structure of sbnh in complex with citrate, a plp-dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
24% identity, 88% coverage: 18:404/439 of query aligns to 10:375/384 of 6knhC
6kniA Crystal structure of sbnh in complex with the cofactor plp, a plp- dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
23% identity, 88% coverage: 18:404/439 of query aligns to 10:371/381 of 6kniA
>WP_011735869.1 NCBI__GCF_000015045.1:WP_011735869.1
MTQNHFGPTRLDAALVPLIAQKWGTPVYLHDRAFIEQSCDQLLNMPNAFGLHVRYAMKAN
SDRTVLRVVTGKGLDLDCSSVDEAARAHSAGIPYDRMMLTTQEVPLGQEREELEGMIRNG
LKYNVCSLTQYRLIADFAKQAGIDLSIRVHPGASGGGESQTRDTGSEYSCFGVHLNDIPT
VVEMARDKGLRFTQVHVHIGSGGDPEKWRENIDRELGFVRSYFPDAGTVSFGGGLKVARM
PGEKQADINELGTYAAARLKEFKEQTGRALRMEIEPGTFVVANSGYIITRVMDKKLTNEM
NFLLVDGGMELLSRPLLYGSEHPISIVGQDGTLRSSEYDSYSVGTATPYGIVGRCCESGD
SVRLDNEGTIVPVQVAEAEIGDYVVIGGTGAYSESMSPENYNSHRKAPAVMKMKDAELVL
IRKRQVREQLVQNELDVDL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory