Comparing WP_011736888.1 NCBI__GCF_000015045.1:WP_011736888.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
1ox5A Towards understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerophosphate synthase (see paper)
37% identity, 100% coverage: 1:206/207 of query aligns to 6:214/532 of 1ox5A
Sites not aligning to the query:
1ox4B Towards understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerophosphate synthase (see paper)
37% identity, 100% coverage: 1:206/207 of query aligns to 6:214/538 of 1ox4B
Sites not aligning to the query:
P33734 Imidazole glycerol phosphate synthase hisHF; IGP synthase; IGPS; ImGP synthase; EC 4.3.2.10; EC 3.5.1.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
37% identity, 100% coverage: 1:206/207 of query aligns to 3:211/552 of P33734
Sites not aligning to the query:
7ac8B Molecular basis for the unique allosteric activation mechanism of the heterodimeric imidazole glycerol phosphate synthase complex. (see paper)
35% identity, 97% coverage: 2:202/207 of query aligns to 5:194/202 of 7ac8B
2ywcA Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
26% identity, 98% coverage: 1:203/207 of query aligns to 1:180/475 of 2ywcA
Sites not aligning to the query:
P37528 Pyridoxal 5'-phosphate synthase subunit PdxT; Pdx2; Pyridoxal 5'-phosphate synthase glutaminase subunit; EC 4.3.3.6; EC 3.5.1.2 from Bacillus subtilis (strain 168) (see 2 papers)
30% identity, 44% coverage: 10:101/207 of query aligns to 11:103/196 of P37528
Sites not aligning to the query:
2nv2J Structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus subtilis (see paper)
30% identity, 44% coverage: 10:101/207 of query aligns to 11:103/196 of 2nv2J
Sites not aligning to the query:
>WP_011736888.1 NCBI__GCF_000015045.1:WP_011736888.1
MIAIIDYGMGNLRSVQKGFERVGVEAVVTDDPRLILEADKIVLPGVGAFRDCMRNLEQAG
FVEPILKVISDGRPFLGICVGMQLLFSDSSEFGLYAGLNVIPGHVLRFPEGMREGGELLK
VPHMGWNQLNIRRRPPAFEGIEEGTNVYFVHSYYVKPDDDGVVATTTGYGSEFCSAVWKD
NIVATQFHPEKSQHAGLSILKNFAAQN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory