SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011764427.1 NCBI__GCF_000061505.1:WP_011764427.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q96PE7 Methylmalonyl-CoA epimerase, mitochondrial; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Homo sapiens (Human) (see paper)
29% identity, 85% coverage: 11:145/158 of query aligns to 48:176/176 of Q96PE7

query
sites
Q96PE7
V
 
L
Q
 
N
Q
x
H
I
 
V
A
 
A
I
 
I
G
 
A
G
 
V
P
 
P
S
 
D
K
 
L
E
 
E
K
 
K
L
 
A
K
 
A
T
 
A
F
 
F
W
 
Y
V
 
K
D
 
N
M
 
I
L
 
L
G
 
G
L
 
A
E
 
Q
V
 
V
T
 
S
G
 
E
N
 
A
F
 
V
V
 
P
S
 
L
E
 
P
R
 
E
E
 
H
N
 
G
V
 
V
D
 
S
E
 
V
D
 
V
I
 
F
C
 
V
A
 
N
M
 
L
G
 
G
K
 
N
G
 
-
P
 
-
F
 
-
K
 
-
V
 
T
E
 
K
V
 
M
D
 
E
L
 
L
M
 
L
Q
 
H
P
 
P
L
 
L
D
 
G
P
x
R
E
 
D
K
 
S
K
 
P
P
 
I
A
 
A
-
 
G
-
 
F
-
 
L
-
 
Q
-
 
K
V
 
N
H
 
K
A
 
A
T
 
G
P
 
G
L
 
M
N
 
H
H
|
H
I
 
I
G
 
C
L
 
I
W
 
E
V
 
V
D
 
D
D
 
N
L
 
I
P
 
N
V
 
A
A
 
A
V
 
V
E
 
M
W
 
D
L
 
L
T
 
K
A
 
K
Q
 
K
G
 
K
V
 
I
R
 
R
F
 
S
A
 
L
P
 
S
G
 
E
G
 
E
I
 
V
R
 
K
R
 
I
G
 
G
A
 
A
A
 
H
G
 
G
Y
 
K
D
 
P
I
 
V
T
 
I
F
 
F
L
 
L
H
 
H
P
 
P
K
 
K
G
 
-
N
 
-
E
 
-
E
 
-
F
 
-
P
 
-
I
 
-
G
 
D
G
 
C
E
 
G
G
 
G
V
 
V
L
 
L
V
 
V
E
|
E
L
 
L
V
 
E
Q
 
Q
A
 
A

Query Sequence

>WP_011764427.1 NCBI__GCF_000061505.1:WP_011764427.1
MSQRPFKILGVQQIAIGGPSKEKLKTFWVDMLGLEVTGNFVSERENVDEDICAMGKGPFK
VEVDLMQPLDPEKKPAVHATPLNHIGLWVDDLPVAVEWLTAQGVRFAPGGIRRGAAGYDI
TFLHPKGNEEFPIGGEGVLVELVQAPPEVVEAFARLAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory