Comparing WP_011777851.1 NCBI__GCF_000015305.1:WP_011777851.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
44% identity, 90% coverage: 21:235/240 of query aligns to 243:452/462 of 3oxoE
1o9lA Succinate:coenzyme-a transferase (pig heart)
42% identity, 93% coverage: 13:235/240 of query aligns to 240:457/468 of 1o9lA
Sites not aligning to the query:
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
43% identity, 89% coverage: 23:235/240 of query aligns to 249:456/466 of 3k6mC
Sites not aligning to the query:
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
44% identity, 87% coverage: 23:231/240 of query aligns to 302:505/520 of Q29551
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
42% identity, 79% coverage: 10:199/240 of query aligns to 238:428/467 of 8i40A
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
43% identity, 76% coverage: 18:199/240 of query aligns to 252:432/471 of 8i3yD
Sites not aligning to the query:
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
44% identity, 73% coverage: 24:199/240 of query aligns to 248:422/459 of 8i3yA
Sites not aligning to the query:
>WP_011777851.1 NCBI__GCF_000015305.1:WP_011777851.1
MTRTVDASTRACVEHLDRGPLDRREIAAMIARDIPAGSYVNLGIGQPTMVADFLDPAAGV
VLHTENGMLGMGGEAIGDAIDPDLTNAGKIPVTETPGASYFHHADSFAMVRGGHLDVCVL
GAFQVSERGDLANWHTGAPDAIPAVGGAMDLAIGAKSVLVMMTLFAKDGTAKLVPSCSYP
LTGLRCVNRVYTDYAVFDIDHTGGGQLRVLHTFGLSIAALEERLRMALSCDGRVADLRQC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory