SitesBLAST
Comparing WP_011778593.1 NCBI__GCF_000015305.1:WP_011778593.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1fqtA Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase (see paper)
37% identity, 88% coverage: 1:104/118 of query aligns to 1:105/109 of 1fqtA
Q8GI16 Ferredoxin CarAc; Carbazole 1,9a-dioxygenase, ferredoxin component; CARDO from Pseudomonas resinovorans (see 2 papers)
38% identity, 85% coverage: 3:102/118 of query aligns to 5:105/107 of Q8GI16
- C46 (= C43) binding [2Fe-2S] cluster
- H48 (= H45) binding [2Fe-2S] cluster
- C65 (= C62) binding [2Fe-2S] cluster
- H68 (= H65) binding [2Fe-2S] cluster
3dqyA Crystal structure of toluene 2,3-dioxygenase ferredoxin (see paper)
33% identity, 87% coverage: 3:105/118 of query aligns to 2:104/106 of 3dqyA
4nbbE Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase (see paper)
38% identity, 85% coverage: 3:102/118 of query aligns to 4:104/114 of 4nbbE
5bokA Ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. Strain ds2
32% identity, 85% coverage: 3:102/118 of query aligns to 3:102/102 of 5bokA
P0A185 Naphthalene 1,2-dioxygenase system, ferredoxin component from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
29% identity, 86% coverage: 1:101/118 of query aligns to 3:103/104 of P0A185
- C45 (= C43) binding [2Fe-2S] cluster
- H47 (= H45) binding [2Fe-2S] cluster
- C64 (= C62) binding [2Fe-2S] cluster
- H67 (= H65) binding [2Fe-2S] cluster
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
2qpzA Naphthalene 1,2-dioxygenase rieske ferredoxin (see paper)
29% identity, 86% coverage: 1:101/118 of query aligns to 2:102/103 of 2qpzA
2i7fA Sphingomonas yanoikuyae b1 ferredoxin (see paper)
36% identity, 62% coverage: 27:99/118 of query aligns to 27:99/102 of 2i7fA
2e4pA Crystal structure of bpha3 (oxidized form) (see paper)
33% identity, 74% coverage: 3:89/118 of query aligns to 2:89/108 of 2e4pA
8hn2A Selenomethionine-labelled soluble domain of rieske iron-sulfur protein from chlorobaculum tepidum (see paper)
31% identity, 83% coverage: 4:101/118 of query aligns to 9:104/110 of 8hn2A
3gceA Ferredoxin of carbazole 1,9a-dioxygenase from nocardioides aromaticivorans ic177 (see paper)
31% identity, 82% coverage: 4:100/118 of query aligns to 4:102/104 of 3gceA
Q17938 Cholesterol 7-desaturase; Cholesterol desaturase daf-36; Rieske oxygenase DAF-36/Neverland; DAF-36/NVD; EC 1.14.19.21 from Caenorhabditis elegans (see paper)
33% identity, 59% coverage: 34:103/118 of query aligns to 113:196/428 of Q17938
- C122 (= C43) mutation to A: Abrogates cholesterol dehydrogenase activity.
Sites not aligning to the query:
- 234 D→A: Abrogates cholesterol dehydrogenase activity.
8jngA Methanesulfonate monooxygenase ferredoxin subunit of pbs-psii-psi-lhcs from porphyridium purpureum.
28% identity, 81% coverage: 3:97/118 of query aligns to 5:115/147 of 8jngA
7qhmN Cytochrome bcc-aa3 supercomplex (respiratory supercomplex iii2/iv2) from corynebacterium glutamicum (stigmatellin and azide bound) (see paper)
32% identity, 70% coverage: 34:116/118 of query aligns to 317:400/401 of 7qhmN
- binding fe2/s2 (inorganic) cluster: C326 (= C43), H328 (= H45), I329 (≠ L46), C331 (= C48), C345 (= C62), H348 (= H65), S350 (= S67)
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: W397 (≠ R113), E398 (≠ A114)
- binding stigmatellin a: C347 (= C64), H348 (= H65)
- binding : Y357 (≠ T73), A368 (≠ P84)
Sites not aligning to the query:
- binding (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate: 176, 177, 179, 180, 181, 184
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: 183, 199
- binding menaquinone-9: 96, 100, 170, 171, 175
- binding : 302, 303, 307, 308, 309, 312, 316
7qhmA Cytochrome bcc-aa3 supercomplex (respiratory supercomplex iii2/iv2) from corynebacterium glutamicum (stigmatellin and azide bound) (see paper)
32% identity, 70% coverage: 34:116/118 of query aligns to 318:401/402 of 7qhmA
- binding fe2/s2 (inorganic) cluster: C327 (= C43), H329 (= H45), I330 (≠ L46), C332 (= C48), C346 (= C62), H349 (= H65), S351 (= S67)
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: E391 (≠ T106), P392 (= P107), E399 (≠ A114), R400 (= R115), K401 (≠ R116)
- binding : A369 (≠ P84)
Sites not aligning to the query:
- binding (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate: 174, 181, 182
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: 184, 200
- binding menaquinone-9: 171, 172, 176
- binding : 308, 309, 310, 313, 316, 317, 402
1z03A 2-oxoquinoline 8-monooxygenase component: active site modulation by rieske-[2fe-2s] center oxidation/reduction (see paper)
33% identity, 65% coverage: 31:107/118 of query aligns to 57:143/427 of 1z03A
Sites not aligning to the query:
1z01A 2-oxoquinoline 8-monooxygenase component: active site modulation by rieske-[2fe-2s] center oxidation/reduction (see paper)
33% identity, 65% coverage: 31:107/118 of query aligns to 57:143/427 of 1z01A
Sites not aligning to the query:
8ovdG Respiratory supercomplex (iii2-iv2) from mycobacterium smegmatis (see paper)
35% identity, 70% coverage: 34:116/118 of query aligns to 297:380/380 of 8ovdG
- binding fe2/s2 (inorganic) cluster: C306 (= C43), H308 (= H45), L309 (= L46), C311 (= C48), C325 (= C62), H328 (= H65), S330 (= S67)
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: D367 (≠ E102), V369 (≠ G104), E378 (≠ A114), K380 (≠ R116)
- binding : A348 (≠ P84), T355 (≠ E91), I356 (vs. gap), D357 (≠ E92), E358 (≠ R93), V363 (≠ F98)
Sites not aligning to the query:
- binding (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate: 68, 72, 177, 178, 180, 181, 182
- binding [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate: 195, 199
- binding menaquinone-9: 96, 100, 161, 164, 165, 168, 175
- binding : 207, 208, 209, 210, 211, 287, 288, 289, 292, 293, 295
8ovcG Respiratory supercomplex (iii2-iv2) from mycobacterium smegmatis (see paper)
35% identity, 70% coverage: 34:116/118 of query aligns to 296:379/380 of 8ovcG
Sites not aligning to the query:
- binding (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate: 67, 71, 176, 179, 181
- binding : 206, 207, 208, 210, 286, 287, 288, 291, 294
6hwhA Structure of a functional obligate respiratory supercomplex from mycobacterium smegmatis (see paper)
35% identity, 70% coverage: 34:116/118 of query aligns to 296:379/380 of 6hwhA
Query Sequence
>WP_011778593.1 NCBI__GCF_000015305.1:WP_011778593.1
MEFVRVARSGQVPEGIVRRFYAGEHEFAVARLKGKAYATSNYCTHLDCLLSSGKLRDDGI
GCSCHGSAFDLETGEPISPPATEPIKTFPCEERDGEIFVGVEPGETPVGPARRARRVL
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory