Comparing WP_011781667.1 NCBI__GCF_000015305.1:WP_011781667.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
28% identity, 81% coverage: 66:352/354 of query aligns to 64:371/377 of 7t1qA
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
26% identity, 97% coverage: 9:353/354 of query aligns to 6:372/377 of P44514
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
26% identity, 97% coverage: 9:353/354 of query aligns to 10:376/380 of 5vo3A
5xoyA Crystal structure of lysk from thermus thermophilus in complex with lysine (see paper)
28% identity, 97% coverage: 7:349/354 of query aligns to 2:331/341 of 5xoyA
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
28% identity, 82% coverage: 64:352/354 of query aligns to 62:375/375 of 4pqaA
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
28% identity, 82% coverage: 64:352/354 of query aligns to 62:375/376 of 4o23A
7lgpB Dape enzyme from shigella flexneri
27% identity, 83% coverage: 59:352/354 of query aligns to 58:372/377 of 7lgpB
7uoiA Crystallographic structure of dape from enterococcus faecium (see paper)
25% identity, 97% coverage: 7:351/354 of query aligns to 9:374/383 of 7uoiA
8uw6B Acetylornithine deacetylase from escherichia coli, di-zinc form. (see paper)
28% identity, 86% coverage: 46:350/354 of query aligns to 56:373/381 of 8uw6B
Sites not aligning to the query:
2f7vA Structure of acetylcitrulline deacetylase complexed with one co (see paper)
27% identity, 90% coverage: 36:354/354 of query aligns to 38:359/360 of 2f7vA
Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
27% identity, 90% coverage: 36:354/354 of query aligns to 37:364/366 of Q8P8J5
1cg2A Carboxypeptidase g2 (see paper)
26% identity, 87% coverage: 34:341/354 of query aligns to 55:372/389 of 1cg2A
P06621 Carboxypeptidase G2; CPDG2; Folate hydrolase G2; Glutamate carboxypeptidase; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; EC 3.4.17.11 from Pseudomonas sp. (strain RS-16) (see paper)
26% identity, 87% coverage: 34:341/354 of query aligns to 80:397/415 of P06621
7m6uB Crystal structure of a circular permutation and computationally designed pro-enzyme of carboxypeptidase g2 (see paper)
26% identity, 83% coverage: 49:341/354 of query aligns to 2:307/392 of 7m6uB
P37111 Aminoacylase-1; ACY-1; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14 from Sus scrofa (Pig) (see paper)
23% identity, 82% coverage: 62:352/354 of query aligns to 73:394/407 of P37111
Sites not aligning to the query:
>WP_011781667.1 NCBI__GCF_000015305.1:WP_011781667.1
MLDLHGDPIALTAALVDIPSESRHEKRIADEIETALREQTAGFEIVRNGDAVLARTDFGR
PSRVLLAGHIDTVPAADNLPSRLADGVLHGCGTSDMKAGDAVFLHLAATVAEPAHDITLV
MYDCEEIEASANGLGRIERELPEWLAADVAILGEPSGGLIEAGCQGTLRVIVRATGTRAH
SARSWLGDNAIHKLSDVLARLRSYQARSVDIDGCVYREGLSAVRIDGGVAGNVIPDAASV
TVNFRFAPDRSVEQAYAHVREVFDRLDVTIELTDAAAGALPGLTRPAAAALVEAAGGQVR
AKYGWTDVSRFAALGIPAVNYGPGDPNLAHRVDESVDVAQITAVTDMLRRYLIG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory