SitesBLAST
Comparing WP_011815043.1 NCBI__GCF_000015585.1:WP_011815043.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
U3KRF2 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 from Actinidia chinensis var. chinensis (Chinese soft-hair kiwi) (see paper)
56% identity, 97% coverage: 6:350/354 of query aligns to 86:439/445 of U3KRF2
3zokA Structure of 3-dehydroquinate synthase from actinidia chinensis in complex with NAD (see paper)
56% identity, 97% coverage: 6:350/354 of query aligns to 6:359/365 of 3zokA
- active site: R122 (= R115), K144 (= K137), E186 (= E179), K228 (= K221), E238 (= E231), R242 (= R235), N246 (= N239), H249 (= H242), H253 (= H246), H266 (= H259)
- binding glycine: K144 (= K137), K228 (= K221), R242 (= R235)
- binding nicotinamide-adenine-dinucleotide: T44 (= T43), V45 (= V44), D73 (= D66), E75 (= E68), K78 (= K71), G106 (= G99), G107 (= G100), V108 (= V101), D111 (= D104), T131 (= T124), T132 (= T125), M134 (≠ L127), D138 (= D131), S139 (= S132), K144 (= K137), K153 (= K146), T174 (= T167), L175 (= L168), E179 (= E172), H266 (= H259)
5eksA Structure of 3-dehydroquinate synthase from acinetobacter baumannii in complex with NAD
54% identity, 99% coverage: 1:351/354 of query aligns to 2:350/355 of 5eksA
- active site: R120 (= R115), K142 (= K137), E184 (= E179), K226 (= K221), R237 (= R235), N241 (= N239), H244 (= H242), H248 (= H246), H261 (= H259)
- binding magnesium ion: E184 (= E179), H244 (= H242), H261 (= H259)
- binding nicotinamide-adenine-dinucleotide: N42 (= N41), V45 (= V44), D71 (= D66), E73 (= E68), K76 (= K71), G104 (= G99), G105 (= G100), V106 (= V101), D109 (= D104), T129 (= T124), T130 (= T125), D136 (= D131), S137 (= S132), K142 (= K137), T172 (= T167), L173 (= L168), E177 (= E172)
Q9KNV2 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
55% identity, 98% coverage: 6:352/354 of query aligns to 6:356/361 of Q9KNV2
3okfA 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase (arob) from vibrio cholerae
55% identity, 98% coverage: 6:352/354 of query aligns to 7:355/360 of 3okfA
- active site: R120 (= R115), K142 (= K137), E184 (= E179), K226 (= K221), R238 (= R235), N242 (= N239), H245 (= H242), H249 (= H246), H262 (= H259)
- binding nicotinamide-adenine-dinucleotide: N42 (= N41), L48 (= L47), D71 (= D66), E73 (= E68), K76 (= K71), G104 (= G99), G105 (= G100), V106 (= V101), D109 (= D104), T129 (= T124), T130 (= T125), L132 (= L127), D136 (= D131), T172 (= T167), L173 (= L168), E177 (= E172)
6llaB Crystal structure of providencia alcalifaciens 3-dehydroquinate synthase (dhqs) in complex with mg2+ and NAD (see paper)
54% identity, 95% coverage: 1:335/354 of query aligns to 2:343/363 of 6llaB
- active site: R121 (= R115), K143 (= K137), E185 (= E179), K227 (= K221), E237 (= E231), R242 (= R235), N246 (= N239), H249 (= H242), H253 (= H246), H266 (= H259)
- binding magnesium ion: E185 (= E179), H249 (= H242), H266 (= H259)
- binding nicotinamide-adenine-dinucleotide: L46 (≠ V44), D72 (= D66), E74 (= E68), K77 (= K71), G105 (= G99), G106 (= G100), V107 (= V101), D110 (= D104), T130 (= T124), T131 (= T125), L133 (= L127), D137 (= D131), K143 (= K137), T173 (= T167), L174 (= L168), E178 (= E172)
6lk2A Crystal structure of providencia alcalifaciens 3-dehydroquinate synthase (dhqs) in complex with mg2+, NAD and chlorogenic acid (see paper)
54% identity, 95% coverage: 1:335/354 of query aligns to 2:339/357 of 6lk2A
- active site: R121 (= R115), K143 (= K137), E185 (= E179), K227 (= K221), R238 (= R235), N242 (= N239), H245 (= H242), H249 (= H246), H262 (= H259)
- binding (1R,3R,4S,5R)-3-[3-[3,4-bis(oxidanyl)phenyl]propanoyloxy]-1,4,5-tris(oxidanyl)cyclohexane-1-carboxylic acid: D137 (= D131), E185 (= E179), K227 (= K221), R238 (= R235), N242 (= N239), H245 (= H242), T246 (= T243), H249 (= H246), H262 (= H259)
- binding magnesium ion: E185 (= E179), H245 (= H242), H262 (= H259)
- binding nicotinamide-adenine-dinucleotide: L46 (≠ V44), D72 (= D66), E74 (= E68), K77 (= K71), G105 (= G99), G106 (= G100), V107 (= V101), D110 (= D104), T130 (= T124), T131 (= T125), L133 (= L127), D137 (= D131), S138 (= S132), C170 (≠ V164), T173 (= T167), L174 (= L168), P175 (= P169), E178 (= E172)
Q5NFS1 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
46% identity, 91% coverage: 12:333/354 of query aligns to 14:339/359 of Q5NFS1
5hvnA 3.0 angstrom crystal structure of 3-dehydroquinate synthase (arob) from francisella tularensis in complex with NAD.
45% identity, 91% coverage: 12:333/354 of query aligns to 17:334/354 of 5hvnA
- active site: R123 (= R115), K145 (= K137), E187 (= E179), K228 (= K221), R239 (= R235), N243 (= N239), H246 (= H242), H250 (= H246), H263 (= H259)
- binding nicotinamide-adenine-dinucleotide: N45 (= N41), L51 (= L47), D73 (= D66), E75 (= E68), K78 (= K71), G107 (= G99), G108 (= G100), V109 (= V101), D112 (= D104), T132 (= T124), T133 (= T125), L135 (= L127), D139 (= D131), K145 (= K137), F172 (≠ V164), T175 (= T167), L176 (= L168), E180 (= E172)
P56081 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see paper)
39% identity, 99% coverage: 1:350/354 of query aligns to 1:339/343 of P56081
3clhA Crystal structure of 3-dehydroquinate synthase (dhqs)from helicobacter pylori (see paper)
42% identity, 82% coverage: 6:297/354 of query aligns to 3:274/308 of 3clhA
- active site: R107 (= R115), K129 (= K137), E171 (= E179), K207 (= K221), R212 (= R235), N216 (= N239), H219 (= H242), H223 (= H246), H236 (= H259)
- binding nicotinamide-adenine-dinucleotide: I33 (≠ T43), V34 (= V44), H38 (vs. gap), S58 (≠ D66), E60 (= E68), K63 (= K71), G91 (= G99), G92 (= G100), V93 (= V101), D96 (= D104), T116 (= T124), T117 (= T125), L119 (= L127), D123 (= D131), A124 (≠ S132), K129 (= K137), N139 (= N147), T159 (= T167), L160 (= L168), E164 (= E172)
1dqsA Crystal structure of dehydroquinate synthase (dhqs) complexed with carbaphosphonate, NAD+ and zn2+ (see paper)
40% identity, 90% coverage: 17:333/354 of query aligns to 13:362/381 of 1dqsA
- active site: R127 (= R115), K149 (= K137), E191 (= E179), K240 (= K221), E250 (= E231), R254 (= R235), N258 (= N239), H261 (= H242), H265 (= H246), H277 (= H259)
- binding [1r-(1alpha,3beta,4alpha,5beta)]-5-(phosphonomethyl)-1,3,4-trihydroxycyclohexane-1-carboxylic acid: D143 (= D131), K149 (= K137), N159 (= N147), E191 (= E179), K240 (= K221), R254 (= R235), L257 (= L238), N258 (= N239), H261 (= H242), H265 (= H246), H277 (= H259), K346 (= K317)
- binding nicotinamide-adenine-dinucleotide: D41 (≠ N41), N43 (≠ T43), I44 (≠ V44), E78 (= E68), K81 (= K71), G111 (= G99), G112 (= G100), V113 (= V101), D116 (= D104), T136 (= T124), T137 (= T125), L139 (= L127), D143 (= D131), S144 (= S132), K158 (= K146), T179 (= T167), P181 (= P169), E184 (= E172), H277 (= H259)
- binding zinc ion: E191 (= E179), H261 (= H242), H277 (= H259)
P9WPX9 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
43% identity, 79% coverage: 50:329/354 of query aligns to 57:335/362 of P9WPX9
Sites not aligning to the query:
1nvbB Crystal structure of 3-dehydroquinate synthase (dhqs) in complex with zn2+ and carbaphosphonate (see paper)
39% identity, 90% coverage: 17:333/354 of query aligns to 14:370/391 of 1nvbB
- active site: R128 (= R115), K150 (= K137), E192 (= E179), K248 (= K221), E258 (= E231), R262 (= R235), N266 (= N239), H269 (= H242), H273 (= H246), H285 (= H259)
- binding [1r-(1alpha,3beta,4alpha,5beta)]-5-(phosphonomethyl)-1,3,4-trihydroxycyclohexane-1-carboxylic acid: D144 (= D131), K150 (= K137), N160 (= N147), E192 (= E179), K248 (= K221), R262 (= R235), L265 (= L238), N266 (= N239), H269 (= H242), H273 (= H246), K354 (= K317)
- binding zinc ion: E192 (= E179), H269 (= H242), H285 (= H259)
P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see 2 papers)
39% identity, 90% coverage: 17:333/354 of query aligns to 16:372/1583 of P07547
6hqvA Pentafunctional arom complex from chaetomium thermophilum (see paper)
43% identity, 75% coverage: 67:333/354 of query aligns to 75:365/1555 of 6hqvA
- active site: R123 (= R115), K145 (= K137), E187 (= E179), K243 (= K221), E253 (= E231), R257 (= R235), N261 (= N239), H264 (= H242), H268 (= H246), H280 (= H259)
- binding glutamic acid: D139 (= D131), K145 (= K137), E187 (= E179), K243 (= K221), R257 (= R235), H264 (= H242), H280 (= H259)
- binding nicotinamide-adenine-dinucleotide: E76 (= E68), K79 (= K71), G107 (= G99), G108 (= G100), V109 (= V101), D112 (= D104), T132 (= T124), T133 (= T125), L135 (= L127), D139 (= D131), S140 (= S132), K145 (= K137), K154 (= K146), T175 (= T167), L176 (= L168), P177 (= P169), E180 (= E172), H280 (= H259)
- binding zinc ion: E187 (= E179), H264 (= H242), H280 (= H259)
Sites not aligning to the query:
- binding (4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid: 1060, 1062, 1181, 1224, 1232, 1242, 1243
- binding nicotinamide-adenine-dinucleotide: 42, 44, 45
- binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: 413, 562, 563, 874, 923, 924, 979, 1277, 1279, 1323, 1327, 1348, 1368, 1526
3qbeA Crystal structure of the 3-dehydroquinate synthase (arob) from mycobacterium tuberculosis
43% identity, 79% coverage: 50:329/354 of query aligns to 52:326/352 of 3qbeA
- active site: R117 (= R115), K139 (= K137), E181 (= E179), K223 (= K221), R233 (= R235), N237 (= N239), H240 (= H242), H244 (= H246), H256 (= H259)
- binding zinc ion: E181 (= E179), H240 (= H242), H256 (= H259)
6c5cA Crystal structure of the 3-dehydroquinate synthase (dhqs) domain of aro1 from candida albicans sc5314 in complex with nadh (see paper)
38% identity, 91% coverage: 15:335/354 of query aligns to 17:367/385 of 6c5cA
- active site: R130 (= R115), K152 (= K137), E194 (= E179), K246 (= K221), E254 (= E231), R258 (= R235), N262 (= N239), H265 (= H242), H269 (= H246), H281 (= H259)
- binding nicotinamide-adenine-dinucleotide: D45 (≠ N41), N47 (≠ T43), M48 (≠ V44), E83 (= E68), K86 (= K71), G114 (= G99), G115 (= G100), V116 (= V101), D119 (= D104), T139 (= T124), T140 (= T125), D146 (= D131), S147 (= S132), F179 (≠ V164), T182 (= T167), L183 (= L168), Q187 (≠ E172)
1xagA Crystal structure of staphlyococcus aureus 3-dehydroquinate synthase (dhqs) in complex with zn2+, NAD+ and carbaphosphonate (see paper)
36% identity, 92% coverage: 11:337/354 of query aligns to 10:334/353 of 1xagA
- active site: R115 (= R115), K136 (= K137), E178 (= E179), K221 (= K221), E231 (= E231), R235 (= R235), N239 (= N239), H242 (= H242), H246 (= H246), H256 (= H259)
- binding [1r-(1alpha,3beta,4alpha,5beta)]-5-(phosphonomethyl)-1,3,4-trihydroxycyclohexane-1-carboxylic acid: K136 (= K137), N146 (= N147), E178 (= E179), K221 (= K221), R235 (= R235), L238 (= L238), N239 (= N239), H242 (= H242), H246 (= H246), K314 (= K317)
- binding nicotinamide-adenine-dinucleotide: D39 (≠ N41), Y41 (≠ T43), V42 (= V44), Y45 (≠ L47), E68 (= E68), K71 (= K71), G99 (= G99), G100 (= G100), A101 (≠ V101), D104 (= D104), T124 (= T124), T125 (= T125), L127 (= L127), D130 (= D131), S131 (= S132), K136 (= K137), K145 (= K146), T166 (= T167), L167 (= L168), Q171 (≠ E172), H256 (= H259)
- binding zinc ion: E178 (= E179), H242 (= H242), H256 (= H259)
Q6GGU4 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Staphylococcus aureus (strain MRSA252) (see paper)
36% identity, 92% coverage: 11:337/354 of query aligns to 10:334/354 of Q6GGU4
- D39 (≠ N41) binding NAD(+)
- Y45 (≠ L47) binding NAD(+)
- EKTK 68:71 (≠ ERYK 68:71) binding NAD(+)
- GATGD 100:104 (≠ GVVGD 100:104) binding NAD(+)
- TT 124:125 (= TT 124:125) binding NAD(+)
- K136 (= K137) binding NAD(+)
- K145 (= K146) binding NAD(+)
- FLKT 163:166 (≠ VLAT 164:167) binding NAD(+)
- E178 (= E179) binding Zn(2+)
- H242 (= H242) binding Zn(2+)
- H256 (= H259) binding Zn(2+)
Query Sequence
>WP_011815043.1 NCBI__GCF_000015585.1:WP_011815043.1
MRTQWVELGERSYPIYIGDGVLDQGVLAEHLVADRALLVSNETVAPLYAERLAVPGAEVQ
SVTLHDGERYKTLQTCEQVYDALIEGRFDRSATVIALGGGVVGDMAGFCAATYQRGVGYI
QVPTTLLAQVDSSVGGKTGVNHPRGKNMIGAFHQPRAVVADTGVLATLPEREYNAGLAEV
VKYGLIRDPAFFDWLEAHVDALRRRDPEALAHAVAESCRNKAEVVAADEREAGERALLNL
GHTFGHAIETYTDYCTWLHGEAVAAGMVMAARMSVRLGWLQRNGLERTIALLEAFGLPTR
PPAIPEARFRELMSVDKKNRGGQLRLVLLRSVGDAVVTGEFAPEALTDTLVEAV
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory