SitesBLAST
Comparing WP_011815179.1 NCBI__GCF_000015585.1:WP_011815179.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6yu6B Crystal structure of mhst in complex with l-leucine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/446 of 6yu6B
6yu5A Crystal structure of mhst in complex with l-valine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/441 of 6yu5A
6yu3A Crystal structure of mhst in complex with l-phenylalanine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/441 of 6yu3A
6yu2A Crystal structure of mhst in complex with l-isoleucine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/441 of 6yu2A
4us3A Crystal structure of the bacterial nss member mhst in an occluded inward-facing state (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/441 of 4us3A
- binding sodium ion: G17 (= G24), A19 (= A26), V20 (= V27), V20 (= V27), G21 (= G28), N24 (= N31), T224 (= T234), D256 (= D266), A313 (= A323), S316 (≠ T326), S317 (= S327)
- binding tryptophan: S18 (= S25), A19 (= A26), L22 (= L29), G23 (= G30), Y101 (= Y112), F223 (= F233), T224 (= T234), S226 (= S236), M229 (≠ L239), S320 (= S330), L321 (≠ I331)
6yu7A Crystal structure of mhst in complex with l-tyrosine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/442 of 6yu7A
6yu4A Crystal structure of mhst in complex with l-4f-phenylalanine (see paper)
46% identity, 97% coverage: 11:448/453 of query aligns to 4:440/442 of 6yu4A
- binding 4-fluoro-l-phenylalanine: S18 (= S25), A19 (= A26), G21 (= G28), L22 (= L29), G23 (= G30), Y101 (= Y112), F223 (= F233), T224 (= T234), S226 (= S236), M229 (≠ L239), L321 (≠ I331)
4us4A Crystal structure of the bacterial nss member mhst in an occluded inward-facing state (lipidic cubic phase form) (see paper)
46% identity, 95% coverage: 18:448/453 of query aligns to 2:431/433 of 4us4A
- binding (2s)-2,3-dihydroxypropyl(7z)-pentadec-7-enoate: A173 (≠ V193), T180 (≠ G200), I287 (≠ M306), R288 (≠ P307), L289 (= L308)
- binding sodium ion: G8 (= G24), S9 (= S25), A10 (= A26), V11 (= V27), V11 (= V27), N15 (= N31), T215 (= T234), D247 (= D266), A304 (= A323), S307 (≠ T326), S308 (= S327)
- binding tryptophan: S9 (= S25), A10 (= A26), G12 (= G28), G14 (= G30), Y92 (= Y112), F214 (= F233), T215 (= T234), S217 (= S236), M220 (≠ L239), L312 (≠ I331)
3gwwA Leucine transporter leut in complex with s-fluoxetine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:399/501 of 3gwwA
- binding leucine: A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F244 (= F233), T245 (= T234), S247 (= S236), F250 (≠ L239), I350 (= I331)
- binding (3S)-N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-amine: L21 (= L29), G22 (= G30), R26 (= R34), Y104 (= Y112), A310 (≠ G291), F311 (≠ P292), D392 (≠ L367), D395 (≠ N370)
3mpnA F177r1 mutant of leut (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/505 of 3mpnA
- binding leucine: N17 (≠ S25), A18 (= A26), G20 (= G28), L21 (= L29), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239), S349 (= S327)
- binding S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate: C171 (≠ G162), A377 (= A351)
2q6hA Crystal structure analysis of leut complexed with l-leucine, sodium, and clomipramine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 5:404/512 of 2q6hA
- binding 3-(3-chloro-5h-dibenzo[b,f]azepin-5-yl)-n,n-dimethylpropan-1-amine: R28 (= R34), Q32 (≠ V38), R189 (= R178), F190 (≠ A179), I193 (≠ L182), F316 (≠ P292), F346 (= F322), L396 (= L366), D397 (≠ L367)
- binding leucine: A20 (= A26), G22 (= G28), G24 (= G30), Y106 (= Y112), F249 (= F233), T250 (= T234), S252 (= S236), F255 (≠ L239)
- binding sodium ion: G18 (= G24), A20 (= A26), V21 (= V27), V21 (= V27), G22 (= G28), N25 (= N31), T250 (= T234), N282 (vs. gap), A347 (= A323), T350 (= T326), S351 (= S327)
3gwuA Leucine transporter leut in complex with sertraline (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/509 of 3gwuA
- binding leucine: A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239)
- binding (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine: L25 (≠ W33), R26 (= R34), Y104 (= Y112), F247 (= F233), A313 (≠ G291), D395 (≠ L367), D398 (≠ N370)
3f4jA Crystal structure of leut bound to glycine and sodium (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/509 of 3f4jA
- binding glycine: A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236)
- binding sodium ion: G16 (= G24), A18 (= A26), V19 (= V27), V19 (= V27), G20 (= G28), G22 (= G30), N23 (= N31), T248 (= T234), N280 (vs. gap), A345 (= A323), G346 (≠ A324), T348 (= T326), S349 (= S327)
3f3dA Crystal structure of leut bound to l-methionine and sodium (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/509 of 3f3dA
- binding methionine: N17 (≠ S25), A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), S349 (= S327), I353 (= I331)
- binding sodium ion: G16 (= G24), A18 (= A26), V19 (= V27), V19 (= V27), G20 (= G28), N23 (= N31), T248 (= T234), N280 (vs. gap), A345 (= A323), T348 (= T326), S349 (= S327)
3f3cA Crystal structure of leut bound to 4-fluoro-l-phenylalanine and sodium (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/509 of 3f3cA
- binding sodium ion: G16 (= G24), A18 (= A26), V19 (= V27), V19 (= V27), G20 (= G28), N23 (= N31), T248 (= T234), N280 (vs. gap), A345 (= A323), T348 (= T326), S349 (= S327)
- binding 4-fluoro-l-phenylalanine: N17 (≠ S25), A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239), S349 (= S327), I353 (= I331)
3gwvA Leucine transporter leut in complex with r-fluoxetine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/498 of 3gwvA
- binding leucine: A18 (= A26), G20 (= G28), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239)
- binding (3R)-N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-amine: L21 (= L29), R26 (= R34), A313 (≠ G291), F314 (≠ P292), L394 (= L366), D395 (≠ L367), D398 (≠ N370)
2qeiA Crystal structure analysis of leut complexed with l-alanine, sodium, and clomipramine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 4:403/511 of 2qeiA
- binding alanine: A19 (= A26), G21 (= G28), G23 (= G30), Y105 (= Y112), F248 (= F233), T249 (= T234), S251 (= S236)
- binding 3-(3-chloro-5h-dibenzo[b,f]azepin-5-yl)-n,n-dimethylpropan-1-amine: R27 (= R34), V30 (≠ Y37), Q31 (≠ V38), Y104 (≠ F111), R180 (= R170), R188 (= R178), F189 (≠ A179), F315 (≠ P292), F345 (= F322), D396 (≠ L367), D399 (≠ N370)
- binding sodium ion: G17 (= G24), A19 (= A26), V20 (= V27), V20 (= V27), G21 (= G28), N24 (= N31), T249 (= T234), N281 (vs. gap), A346 (= A323), T349 (= T326), S350 (= S327)
2qb4A Crystal structure analysis of leut complexed with l-leucine, sodium and desipramine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/510 of 2qb4A
- binding 3-(10,11-dihydro-5h-dibenzo[b,f]azepin-5-yl)-n-methylpropan-1-amine: R26 (= R34), V29 (≠ Y37), Q30 (≠ V38), I107 (≠ V115), R187 (= R178), F188 (≠ A179), I191 (≠ L182), A313 (≠ G291), F314 (≠ P292), F344 (= F322), D395 (≠ L367)
- binding leucine: A18 (= A26), G20 (= G28), L21 (= L29), G22 (= G30), Y104 (= Y112), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239)
- binding sodium ion: G16 (= G24), A18 (= A26), V19 (= V27), V19 (= V27), G20 (= G28), N23 (= N31), T248 (= T234), N280 (vs. gap), A345 (= A323), T348 (= T326), S349 (= S327)
2q72A Crystal structure analysis of leut complexed with l-leucine, sodium, and imipramine (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 4:403/511 of 2q72A
- binding 3-(5h-dibenzo[b,f]azepin-5-yl)-n,n-dimethylpropan-1-amine: R27 (= R34), V30 (≠ Y37), Q31 (≠ V38), R188 (= R178), F189 (≠ A179), I192 (≠ L182), A314 (≠ G291), F315 (≠ P292), F345 (= F322), D396 (≠ L367)
- binding leucine: A19 (= A26), G21 (= G28), L22 (= L29), G23 (= G30), Y105 (= Y112), F248 (= F233), T249 (= T234), S251 (= S236), F254 (≠ L239)
- binding sodium ion: G17 (= G24), A19 (= A26), V20 (= V27), V20 (= V27), G21 (= G28), N24 (= N31), T249 (= T234), N281 (vs. gap), A346 (= A323), T349 (= T326), S350 (= S327)
3uspA Crystal structure of leut in heptyl-beta-d-selenoglucoside (see paper)
33% identity, 80% coverage: 11:374/453 of query aligns to 3:402/503 of 3uspA
- binding heptyl 1-seleno-beta-D-glucopyranoside: K117 (≠ Y125), L122 (≠ T130), E153 (vs. gap), I155 (vs. gap), K157 (vs. gap), P158 (vs. gap), F161 (= F155), Y163 (≠ H157), H385 (≠ W359), H385 (≠ W359), L386 (= L360), F389 (≠ I363), F389 (≠ I363), L394 (= L366), D395 (≠ L367), D398 (≠ N370)
- binding leucine: A18 (= A26), G20 (= G28), G22 (= G30), F247 (= F233), T248 (= T234), S250 (= S236), F253 (≠ L239)
- binding sodium ion: G16 (= G24), A18 (= A26), V19 (= V27), V19 (= V27), G20 (= G28), N23 (= N31), T248 (= T234), N280 (vs. gap), A345 (= A323), T348 (= T326), S349 (= S327)
Sites not aligning to the query:
Query Sequence
>WP_011815179.1 NCBI__GCF_000015585.1:WP_011815179.1
MKDLRQSIHGEWGSRWAFILAATGSAVGLGNIWRFPYVVGEYGGGAFILIYLACILAIGI
PVMMAEILIGRRGRQSPINTMRALPAEFGAGRWWQILGWLGVIAGFLVLSFYSVVAGWSL
AYVPYTAAGTFTGTETSQVEAIFNDLLASPWQMLFWHTVFMGATAFIVLRGVQNGLERAV
RLLMPILFLLLLVMVGYGMGAGAFVEAMDFMFSPDFSAIGGDAVLVAMGQAFFTLSLGLG
AIMAYGSYLSKRSSIPGNSGLIAGADTVIALLAGLAIFPIVLAAGLDPDSGPGLVFVTLS
YGFGQMPLGALFGTLFFLLLSFAALTSAISIMEPATAYLVETRGWKRPKAAAAVAAAAWL
VGIGSLLAFNVWAGFTIAGLNFQELAEYLSTSVMLPLGGLLMALFAGWVLPRSVTTEELA
LPDWVYRGWLVLVRFVVPAAILVVFANSLGLLG
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory