Comparing WP_011840202.1 NCBI__GCF_000015985.1:WP_011840202.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
42% identity, 94% coverage: 7:374/392 of query aligns to 5:376/393 of 3jtxB
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
26% identity, 97% coverage: 8:387/392 of query aligns to 10:384/393 of 6l1nA
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
26% identity, 94% coverage: 18:387/392 of query aligns to 21:385/393 of 6l1lB
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
26% identity, 94% coverage: 18:387/392 of query aligns to 21:385/392 of 6l1oB
Sites not aligning to the query:
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
26% identity, 95% coverage: 18:390/392 of query aligns to 14:382/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
26% identity, 95% coverage: 18:390/392 of query aligns to 14:382/388 of 1gd9A
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
24% identity, 93% coverage: 28:390/392 of query aligns to 36:382/384 of 1o4sB
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
26% identity, 91% coverage: 28:383/392 of query aligns to 16:368/380 of 2x5dD
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
24% identity, 90% coverage: 36:388/392 of query aligns to 42:393/402 of P14909
Sites not aligning to the query:
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
25% identity, 93% coverage: 25:390/392 of query aligns to 25:368/370 of Q58097
2o1bA Structure of aminotransferase from staphylococcus aureus
25% identity, 92% coverage: 32:391/392 of query aligns to 22:373/376 of 2o1bA
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
27% identity, 95% coverage: 20:390/392 of query aligns to 22:382/385 of Q56232
Sites not aligning to the query:
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
27% identity, 95% coverage: 20:390/392 of query aligns to 22:382/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
27% identity, 95% coverage: 20:390/392 of query aligns to 22:382/382 of 1bjwA
5wmiA Arabidopsis thaliana prephenate aminotransferase mutant- t84v (see paper)
26% identity, 93% coverage: 28:390/392 of query aligns to 27:396/402 of 5wmiA
Sites not aligning to the query:
5wmhA Arabidopsis thaliana prephenate aminotransferase (see paper)
26% identity, 93% coverage: 28:390/392 of query aligns to 27:396/399 of 5wmhA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
27% identity, 95% coverage: 20:390/392 of query aligns to 22:382/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
28% identity, 97% coverage: 11:390/392 of query aligns to 13:382/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
28% identity, 97% coverage: 11:390/392 of query aligns to 13:382/382 of 1gc3A
5wmlA Arabidopsis thaliana prephenate aminotransferase mutant- k306a (see paper)
25% identity, 93% coverage: 28:390/392 of query aligns to 28:397/404 of 5wmlA
Sites not aligning to the query:
>WP_011840202.1 NCBI__GCF_000015985.1:WP_011840202.1
MAFPERFSNLPDYAFPRLRKLLDPHAPGGEPVAMTIGEPKHPMPEFVGPVLAESLAGFGL
YPPNDGTPELLSAIGGWLKRRYRVDLGPERLMVLNGTREGLFNAALALVPETKRGARPVV
LMPNPFYQVYAMAALALGAEPVYVPALASNGFLPDYASLPAEILERTALAYLCSPANPQG
SVASRDYWAGLMDLAETHDFRLFADECYAEIWRTAPPAGALEVADATGADPERIFAFHSL
SKRSNLPGLRSGFVAGGPEGIARIRQLRAFAGAPLPLPVQRVSERAWADETHVEANRALY
QEKFRIADEVFSGLQGYMGPEGGFFLWLPVPDGEEAALKLWTETGVRVLPGAYLAREVGG
ENPGKGYIRVAMVAPKDEMQRGLVRLRDCLYG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory