Comparing WP_011842151.1 NCBI__GCF_000015985.1:WP_011842151.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3i5tA Crystal structure of aminotransferase prk07036 from rhodobacter sphaeroides kd131
99% identity, 96% coverage: 12:460/467 of query aligns to 1:444/444 of 3i5tA
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
41% identity, 94% coverage: 18:454/467 of query aligns to 11:446/450 of 6gwiB
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
40% identity, 92% coverage: 23:452/467 of query aligns to 15:446/454 of 7ypmA
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
40% identity, 89% coverage: 38:452/467 of query aligns to 32:446/455 of 7ypnD
5kr6B Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
37% identity, 94% coverage: 18:454/467 of query aligns to 14:457/460 of 5kr6B
8wqjA Crystal structure of transaminase from shimia marina
37% identity, 91% coverage: 20:443/467 of query aligns to 19:440/472 of 8wqjA
5kr5A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
38% identity, 94% coverage: 18:456/467 of query aligns to 10:455/455 of 5kr5A
6fyqA The crystal structure of a new transaminase from the marine bacterium virgibacillus (see paper)
37% identity, 94% coverage: 18:458/467 of query aligns to 8:443/443 of 6fyqA
7qx3A Structure of the transaminase tr2e2 with eos (see paper)
38% identity, 90% coverage: 38:458/467 of query aligns to 3:422/422 of 7qx3A
3fcrA Crystal structure of putative aminotransferase (yp_614685.1) from silicibacter sp. Tm1040 at 1.80 a resolution
37% identity, 93% coverage: 18:453/467 of query aligns to 13:456/458 of 3fcrA
5kr3A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
37% identity, 94% coverage: 18:454/467 of query aligns to 13:454/458 of 5kr3A
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
36% identity, 94% coverage: 18:454/467 of query aligns to 12:455/459 of 5kquC
7qx0B Transaminase structure of plurienzyme (tr2e2) in complex with plp (see paper)
36% identity, 94% coverage: 20:458/467 of query aligns to 12:443/443 of 7qx0B
3gjuA Crystal structure of a putative aminotransferase (mll7127) from mesorhizobium loti maff303099 at 1.55 a resolution
36% identity, 96% coverage: 8:455/467 of query aligns to 4:458/458 of 3gjuA
D6R3B6 Vanillin aminotransferase; Putative aminotransferase; pAMT; EC 2.6.1.119 from Capsicum frutescens (Cayenne pepper) (Tabasco pepper) (see paper)
35% identity, 89% coverage: 38:453/467 of query aligns to 29:447/459 of D6R3B6
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
35% identity, 96% coverage: 5:453/467 of query aligns to 1:446/448 of 6io1B
6g4dB Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp (see paper)
35% identity, 91% coverage: 29:454/467 of query aligns to 18:446/453 of 6g4dB
Sites not aligning to the query:
6g4fA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with pmp (see paper)
35% identity, 91% coverage: 29:454/467 of query aligns to 18:446/451 of 6g4fA
Sites not aligning to the query:
6g4eA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) (see paper)
35% identity, 91% coverage: 29:454/467 of query aligns to 18:446/451 of 6g4eA
Sites not aligning to the query:
5ti8B Crystal structure of an aspartate aminotransferase from pseudomonas (see paper)
35% identity, 90% coverage: 38:455/467 of query aligns to 2:381/384 of 5ti8B
>WP_011842151.1 NCBI__GCF_000015985.1:WP_011842151.1
MTRNDATNAAGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPA
GMWCAQVGYGRREIVDAIAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTT
GGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQD
RISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPA
GYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLG
GLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADY
FAAALASLRDLPGVAETRSVGLVGCVQCLLDPSRADGTAEDKAFTLKIDERCFELGLIVR
PLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory