Comparing WP_011842381.1 NCBI__GCF_000015985.1:WP_011842381.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
38% identity, 98% coverage: 3:487/497 of query aligns to 2:485/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 44% coverage: 5:224/497 of query aligns to 2:218/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 44% coverage: 5:224/497 of query aligns to 1:218/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 45% coverage: 5:230/497 of query aligns to 3:227/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 45% coverage: 5:230/497 of query aligns to 3:227/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 45% coverage: 5:230/497 of query aligns to 3:227/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 45% coverage: 5:230/497 of query aligns to 3:227/242 of 2oljA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 43% coverage: 9:224/497 of query aligns to 8:232/254 of 1g6hA
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 45% coverage: 1:223/497 of query aligns to 1:226/233 of P75957
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 43% coverage: 9:224/497 of query aligns to 8:232/253 of 1g9xB
7mdyC Lolcde nucleotide-bound
32% identity, 45% coverage: 5:226/497 of query aligns to 2:226/226 of 7mdyC
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
32% identity, 44% coverage: 5:223/497 of query aligns to 4:225/229 of 7v8iD
7arlD Lolcde in complex with lipoprotein and adp (see paper)
32% identity, 44% coverage: 5:222/497 of query aligns to 2:222/222 of 7arlD
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
27% identity, 49% coverage: 1:242/497 of query aligns to 2:240/240 of 1ji0A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 46% coverage: 5:231/497 of query aligns to 17:238/378 of P69874
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 45% coverage: 5:228/497 of query aligns to 1:227/343 of P30750
Sites not aligning to the query:
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
30% identity, 46% coverage: 2:228/497 of query aligns to 1:224/257 of 8wm7D
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
28% identity, 45% coverage: 5:228/497 of query aligns to 2:228/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
28% identity, 45% coverage: 5:228/497 of query aligns to 2:228/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
28% identity, 45% coverage: 5:228/497 of query aligns to 2:228/344 of 6cvlD
>WP_011842381.1 NCBI__GCF_000015985.1:WP_011842381.1
MSDTLIELRNIGKRFGGVRALDGVSLAIRPGEIHCLAGENGSGKSTVIKVMSGIYTPEEG
EILIDGRPVGRLDPIRAVQHGVQVIYQDFSLFGNLTVAENLALNTYVLEGRRRMDWRRAR
TMAVEVLARLGVDIDPDAEVGTLPTSGRQVVAIARAILAKARLIIMDEPTTALTRHEVDA
LFAIVRDLQAQGIAVLFVSHKMREMLEISERLTVFRNGRKVAEGPMSDFDEAAITHAMTG
LSLTDDPYRPALPPGPPLLEVRKLSVPGSVQDIDLSLRPGEIVGISGLIGSGRTELARAL
FGMEPAMTGTLRLEGREIHPRSVQEAIALGIAYVPEDRLTEGLFLPQSIERNLVVSILER
LRRGPFLDTGAVREKTLGMFRDMQIAAPSPETAVGNLSGGNAQRVMLGRWLLTGARVLIL
NGPTVGVDVGSKATIHRIIRDLAQREGLGVLMISDDVPELVTNCNRIHVMHRGRFVADLD
GSGMTEDRINDALKTLN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory