Comparing WP_011842530.1 NCBI__GCF_000015985.1:WP_011842530.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4oanA Crystal structure of a trap periplasmic solute binding protein from rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2- acetolactate) (see paper)
65% identity, 91% coverage: 30:337/337 of query aligns to 5:312/312 of 4oanA
P44542 Sialic acid-binding periplasmic protein SiaP; Extracytoplasmic solute receptor protein SiaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 2 papers)
27% identity, 98% coverage: 6:334/337 of query aligns to 6:326/329 of P44542
Q16BC9 Solute-binding protein RD1_1052 from Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) (see paper)
34% identity, 78% coverage: 39:300/337 of query aligns to 30:295/325 of Q16BC9
4pcdA Crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with bound l-galactonate (see paper)
34% identity, 77% coverage: 42:300/337 of query aligns to 9:271/300 of 4pcdA
4pc9A Crystal structure of a trap periplasmic solute binding protein from rosenbacter denitrificans och 114 (rd1_1052, target efi-510238) with bound d-mannonate (see paper)
34% identity, 77% coverage: 42:300/337 of query aligns to 9:271/300 of 4pc9A
2v4cA Structure of sialic acid binding protein (siap) in the presence of kdn (see paper)
28% identity, 91% coverage: 30:334/337 of query aligns to 1:303/309 of 2v4cA
3b50A Structure of h. Influenzae sialic acid binding protein bound to neu5ac. (see paper)
28% identity, 91% coverage: 30:334/337 of query aligns to 1:303/310 of 3b50A
2wx9A Crystal structure of the sialic acid binding periplasmic protein siap (see paper)
28% identity, 91% coverage: 30:334/337 of query aligns to 1:303/308 of 2wx9A
2cexB Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
28% identity, 84% coverage: 51:334/337 of query aligns to 21:302/305 of 2cexB
Sites not aligning to the query:
2cexA Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
28% identity, 84% coverage: 51:334/337 of query aligns to 21:302/304 of 2cexA
Sites not aligning to the query:
2xwoA Siap r147e mutant in complex with sialylamide (see paper)
27% identity, 91% coverage: 30:334/337 of query aligns to 1:303/308 of 2xwoA
4p3lA Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085, with bound glucuronate, spg p6122 (see paper)
32% identity, 71% coverage: 38:275/337 of query aligns to 7:243/303 of 4p3lA
4mnpA Structure of the sialic acid binding protein from fusobacterium nucleatum subsp. Nucleatum atcc 25586 (see paper)
30% identity, 84% coverage: 51:332/337 of query aligns to 21:303/305 of 4mnpA
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
33% identity, 77% coverage: 51:309/337 of query aligns to 21:278/304 of 4xeqB
Sites not aligning to the query:
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
32% identity, 72% coverage: 32:275/337 of query aligns to 9:243/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
32% identity, 72% coverage: 32:275/337 of query aligns to 9:243/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
32% identity, 72% coverage: 32:275/337 of query aligns to 9:243/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
32% identity, 72% coverage: 32:275/337 of query aligns to 9:243/310 of 7bcnA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
32% identity, 72% coverage: 32:275/337 of query aligns to 10:244/310 of 7bbrA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
28% identity, 82% coverage: 57:333/337 of query aligns to 27:301/303 of 4pddA
Sites not aligning to the query:
>WP_011842530.1 NCBI__GCF_000015985.1:WP_011842530.1
MTINRRRFVATAGGVLLAAPFLRPGMAHAAEYSYKYANNFPVGHPMNTQMEAAAKRISEE
TDGRFELKIFPNNQLGSDTDTLNQVRSGAVEFFTLSGLILSSLVPVASINGMGFAFKDID
QVWQAMDGELGAYVREQIRANRLEVMDRIFNNGFRQITTSSRPIEGPDDLAGLKIRVPVS
PLWTSMFQALGCAPVSINWNEVYTSLQTGVVDAQENPLSTIDVGKLYEVQTYCSMTNHMW
DGFWMLANPRAWRALPDDLQEIVARNINQAALDQREDLTQLNATLQSELEKDGLIFNKPD
TAAIRDKLREAGFYSEWRSTYGDEAWALLEQVSGSLA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory