Comparing WP_011867827.1 NCBI__GCF_000016125.1:WP_011867827.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
34% identity, 87% coverage: 16:376/416 of query aligns to 10:359/393 of 6l1nA
Sites not aligning to the query:
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
34% identity, 87% coverage: 16:376/416 of query aligns to 10:360/392 of 6l1oB
Sites not aligning to the query:
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
34% identity, 87% coverage: 16:376/416 of query aligns to 10:360/393 of 6l1lB
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
31% identity, 89% coverage: 34:405/416 of query aligns to 9:369/380 of 2x5dD
2o1bA Structure of aminotransferase from staphylococcus aureus
30% identity, 90% coverage: 44:416/416 of query aligns to 19:376/376 of 2o1bA
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
30% identity, 87% coverage: 45:405/416 of query aligns to 26:386/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
30% identity, 87% coverage: 45:405/416 of query aligns to 26:386/388 of 1gd9A
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
26% identity, 80% coverage: 25:358/416 of query aligns to 11:344/393 of 3jtxB
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
27% identity, 78% coverage: 45:370/416 of query aligns to 38:350/384 of 1o4sB
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
24% identity, 85% coverage: 19:370/416 of query aligns to 16:360/402 of P14909
Sites not aligning to the query:
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/385 of Q56232
Sites not aligning to the query:
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/382 of 1bjwA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
24% identity, 83% coverage: 35:381/416 of query aligns to 22:363/382 of 1gc3A
Sites not aligning to the query:
Q93ZN9 LL-diaminopimelate aminotransferase, chloroplastic; AtDAP-AT; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; Protein ABERRANT GROWTH AND DEATH 2; EC 2.6.1.83 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
30% identity, 61% coverage: 25:278/416 of query aligns to 72:334/461 of Q93ZN9
Sites not aligning to the query:
3ei5A Crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-glu: an external aldimine mimic (see paper)
30% identity, 61% coverage: 25:278/416 of query aligns to 19:281/408 of 3ei5A
Sites not aligning to the query:
2z1zA Crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with l-malate ion (see paper)
30% identity, 61% coverage: 25:278/416 of query aligns to 19:281/408 of 2z1zA
Sites not aligning to the query:
3ei6A Crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-dap: an external aldimine mimic (see paper)
30% identity, 61% coverage: 25:278/416 of query aligns to 19:281/410 of 3ei6A
Sites not aligning to the query:
>WP_011867827.1 NCBI__GCF_000016125.1:WP_011867827.1
MESYIQNLFAERIGGKSFGKEDVIYKFEKIKRAKQAAKLKYPDMELIDMGVGEPDEMADE
SVVEVLCEEAKKHENRGYSDNGVQALKDEIPLYMEKVFGVKDLDPVNEVVHSIGSKPALA
YITSVFINPGDVTLMTVPGYPVTATHTKWYGGSVETLPLLEKNNFLPELDAISKEVREKA
KILYLNYPNNPTGAQATKKFYKEAVDFAFENDLIVIQDAAYAALTYGDKPLSFLTVKGAK
EVGVEIHSFSKAYNMTGWRLAFVAGNELIVRGFAAVKDNYDSGQFIPIQKAGIHCLRHPE
ITEKTRAKYERRLSKMVKILKEAGFNAKMPGGTFYLYVKAPIGTKDGAKFANAEEFSQFM
IKEKLISTVPWDDAGNFVRMAACFEAFKDGEISIEEEDRILNEVKRRLTEVEFVFE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory