Comparing WP_011868096.1 NCBI__GCF_000016125.1:WP_011868096.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 11 hits to proteins with known functional sites (download)
2d6fD Crystal structure of glu-tRNA(gln) amidotransferase in the complex with tRNA(gln) (see paper)
51% identity, 86% coverage: 4:547/631 of query aligns to 2:521/522 of 2d6fD
3h0rH Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
27% identity, 41% coverage: 6:264/631 of query aligns to 1:237/410 of 3h0rH
Sites not aligning to the query:
3h0rE Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
27% identity, 41% coverage: 6:264/631 of query aligns to 1:237/410 of 3h0rE
3h0rB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
27% identity, 41% coverage: 6:264/631 of query aligns to 1:237/410 of 3h0rB
3h0lB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
27% identity, 41% coverage: 6:264/631 of query aligns to 1:237/410 of 3h0lB
3al0B Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
27% identity, 41% coverage: 12:269/631 of query aligns to 7:248/482 of 3al0B
Sites not aligning to the query:
3ip4B The high resolution structure of gatcab (see paper)
33% identity, 25% coverage: 93:250/631 of query aligns to 51:222/482 of 3ip4B
Sites not aligning to the query:
2df4B Structure of tRNA-dependent amidotransferase gatcab complexed with mn2+ (see paper)
33% identity, 25% coverage: 93:250/631 of query aligns to 50:221/399 of 2df4B
Sites not aligning to the query:
2g5iB Structure of tRNA-dependent amidotransferase gatcab complexed with adp-alf4 (see paper)
33% identity, 25% coverage: 93:250/631 of query aligns to 50:221/410 of 2g5iB
Sites not aligning to the query:
4wj3B Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa (see paper)
37% identity, 21% coverage: 151:281/631 of query aligns to 115:245/456 of 4wj3B
Sites not aligning to the query:
3kfuF Crystal structure of the transamidosome (see paper)
23% identity, 42% coverage: 12:276/631 of query aligns to 6:236/447 of 3kfuF
Sites not aligning to the query:
>WP_011868096.1 NCBI__GCF_000016125.1:WP_011868096.1
MDHDYEKLGLKVGLEIHQQLNTKRKLFCNCPTKIRDDEPHGEIERVLRPSQSEMGHVDKA
ALLESKKEKKFIYQYYNDSTCLVELDDEPPHDVSPEAVDTALEVSTLMNMKMADEVQIMR
KMVIDGSNTSGFQRTMFVSQEGFIETEYGNIGVTSLCLEEDACKKIEDGKDYTKYCVDRL
GIPLLEITTEPDITSPKMGKEAARRIGTILRATGKVKRGLGTIRQDVNISIREGARIEVK
GVQNLDLIEKIIENEVTRQISLNEIKEELLKRNAEVVDEIKDITELLKDTESKVLKSALK
NKGVIRAILLKGFSGMIGREVQPGRRLGTEFSDRGKVLGGVGGLFHTDELPKYGITEEEV
TKLKEYMNCGENDAVILVADKKNKVERALNAVIERAKESMIGIPEETRKALDDGNTSYLR
PLPGAARMYPETDVPTITITEEKLEAIRNNLPEMPEEKLVRFVKEYELNEDLAKQMVMSY
HVDLFESLSKKYSKIKPTLIATTLEATLKEIKREGLDTDLLTEEHLEELFKGLSEDKMSK
EAVPDVIKGFIENPSKKLDEILEIKGMSSMSVDEVESIIEDIINQNISQVNEKGMGAMGL
LMGRCMAQLRGKADGKLINTTLQKKLKEKVQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory