Comparing WP_011883666.1 NCBI__GCF_000016205.1:WP_011883666.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
45% identity, 49% coverage: 21:334/642 of query aligns to 5:318/320 of 1sz2B
8ju9A Molecular mechanism of the one-component regulator rccr on bacterial metabolism and virulence (see paper)
42% identity, 40% coverage: 343:598/642 of query aligns to 3:258/280 of 8ju9A
8k3bA The pseudomonas aeruginosa rccr protein complexed with kdpg
42% identity, 40% coverage: 343:598/642 of query aligns to 3:258/281 of 8k3bA
4ivnA The vibrio vulnificus nanr protein complexed with mannac-6p (see paper)
28% identity, 38% coverage: 346:590/642 of query aligns to 5:236/264 of 4ivnA
Sites not aligning to the query:
7en6D The crystal structure of escherichia coli murr in apo form (see paper)
34% identity, 22% coverage: 453:594/642 of query aligns to 30:172/177 of 7en6D
7en7A The crystal structure of escherichia coli murr in complex with n- acetylmuramic-acid-6-phosphate (see paper)
34% identity, 22% coverage: 453:594/642 of query aligns to 26:168/191 of 7en7A
7en5A The crystal structure of escherichia coli murr in complex with n- acetylglucosamine-6-phosphate (see paper)
34% identity, 22% coverage: 453:594/642 of query aligns to 26:167/190 of 7en5A
6da0A Crystal structure of glucokinase (nfhk) from naegleria fowleri (see paper)
24% identity, 46% coverage: 24:318/642 of query aligns to 32:361/378 of 6da0A
3etnB Crystal structure of putative phosphosugar isomerase involved in capsule formation (yp_209877.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution (see paper)
28% identity, 14% coverage: 475:567/642 of query aligns to 52:147/198 of 3etnB
Sites not aligning to the query:
>WP_011883666.1 NCBI__GCF_000016205.1:WP_011883666.1
MSTGAQSKAVVAGQHADGPRLLADVGGTNARFALETGPGEITQIRVYPGADYPTLTDAIR
KYLKDVKIARVNHAAIAIANPVDGDQVTMTNHDWSFSIEATRRALGFDTLLVVNDFTALA
MALPGLTDAQRVQIGGGTRRQNSVIGLLGPGTGLGVSGLIPADDRWIALGSEGGHASFAP
QDEREDLVLQYARKKFPHVSFERVCAGPGIEIIYRALAARDKKRVAASVDTADIVERAHA
GEALALETVECFCGILGSFAGSVALTLGALGGVYIGGGVALKLGELFTRSSFRARFEAKG
RFAHYLQNIPTYLITAEYPAFLGVSAILAEQLSNRSGGASSAVFERIRQMRDALTPAERR
VADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPM
SHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSN
IVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQ
AGAKVIAITSSNTPLAKRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRRAS
TAGELPEAVAQARARASDDETADVLDWLSHGASPAAKDVARD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory