Comparing WP_011883672.1 NCBI__GCF_000016205.1:WP_011883672.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
56% identity, 93% coverage: 28:413/415 of query aligns to 5:393/396 of 5dvjA
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
56% identity, 93% coverage: 28:413/415 of query aligns to 5:393/396 of 5dviA
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
51% identity, 94% coverage: 23:413/415 of query aligns to 2:392/395 of 4r2bA
8hqqA Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
52% identity, 91% coverage: 25:401/415 of query aligns to 2:383/398 of 8hqqA
8kd0A Crystal structure of sar11_0769 from 'candidatus pelagibacter ubique' htcc1062 bound to a co-purified ligand, beta-galactopyranose
52% identity, 91% coverage: 25:401/415 of query aligns to 1:382/397 of 8kd0A
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
28% identity, 90% coverage: 28:399/415 of query aligns to 3:372/392 of 2b3fA
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 90% coverage: 28:399/415 of query aligns to 3:372/392 of 2b3bC
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 90% coverage: 28:399/415 of query aligns to 3:372/392 of 2b3bA
4g68A Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus (see paper)
30% identity, 49% coverage: 69:270/415 of query aligns to 43:247/392 of 4g68A
Sites not aligning to the query:
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
27% identity, 48% coverage: 91:288/415 of query aligns to 66:277/390 of 3oo6A
Sites not aligning to the query:
3vxcA Crystal structure of xylobiose-bxle complex from streptomyces thermoviolaceus opc-520
30% identity, 36% coverage: 129:276/415 of query aligns to 108:264/398 of 3vxcA
Sites not aligning to the query:
6preA Sbp rafe in complex with verbascose (see paper)
28% identity, 27% coverage: 74:184/415 of query aligns to 47:156/386 of 6preA
Sites not aligning to the query:
2i58A Crystal structure of rafe from streptococcus pneumoniae complexed with raffinose
28% identity, 27% coverage: 74:184/415 of query aligns to 46:155/385 of 2i58A
Sites not aligning to the query:
5f7vA Abc substrate-binding protein lmo0181 from listeria monocytogenes in complex with cycloalternan (see paper)
26% identity, 49% coverage: 71:273/415 of query aligns to 44:249/388 of 5f7vA
Sites not aligning to the query:
7vfqC Wild type glta from bifidobacterium infantis jcm 1222 complexed with lacto-n-tetraose
26% identity, 39% coverage: 65:227/415 of query aligns to 42:221/397 of 7vfqC
Sites not aligning to the query:
>WP_011883672.1 NCBI__GCF_000016205.1:WP_011883672.1
MKVRSIMGALCAAGLMAGAVAAQAAENVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF
AVAGGAGAAAMTALKTKVISGDAPSAAQIKGPLIQDWADQGVLVNIDSAATDWKQNLPPE
IDKIIKYKGHTVAAPFSVHRVNWLYVNKAALDKIGAKVPTTWPEFFAVADKLKAAGIQPV
AMGGQPWQDLTLWEDVVLSQGPAFYKKALVDLDQATLTSPQMLSVFDTVRKIQGYFDTGR
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKAGKDYICAPVPGTANAYTFNVDSF
VFFQQKGEKNATPGQLALAKTIMTPAFQEQFSLLKGSVPVRLGVKMDKFDDCAKKSYADE
QTAIKSGGFVPSLAHGMAQGDATAGAITDVVTKFMNSQQDSKSAVAALAKAAKVK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory