Comparing WP_011906830.1 NCBI__GCF_000013325.1:WP_011906830.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
45% identity, 86% coverage: 19:226/241 of query aligns to 9:225/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
45% identity, 86% coverage: 19:226/241 of query aligns to 9:225/230 of 1l2tA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
44% identity, 93% coverage: 17:240/241 of query aligns to 10:234/648 of P75831
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
43% identity, 87% coverage: 16:224/241 of query aligns to 8:220/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
43% identity, 87% coverage: 16:224/241 of query aligns to 8:220/615 of 5lilA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 85% coverage: 21:225/241 of query aligns to 13:221/226 of 5xu1B
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 86% coverage: 17:224/241 of query aligns to 11:223/233 of P75957
7mdyC Lolcde nucleotide-bound
41% identity, 86% coverage: 17:224/241 of query aligns to 8:220/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
41% identity, 86% coverage: 17:224/241 of query aligns to 8:220/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
41% identity, 86% coverage: 17:224/241 of query aligns to 10:222/229 of 7v8iD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
43% identity, 81% coverage: 31:225/241 of query aligns to 19:217/223 of 2pclA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
41% identity, 88% coverage: 24:236/241 of query aligns to 17:229/650 of 5ws4A
8g4cB Bceabs atpgs high res tm (see paper)
35% identity, 87% coverage: 15:224/241 of query aligns to 7:221/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
34% identity, 87% coverage: 15:224/241 of query aligns to 6:220/245 of 7tchB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
41% identity, 81% coverage: 15:209/241 of query aligns to 5:203/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
40% identity, 81% coverage: 15:209/241 of query aligns to 6:204/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
40% identity, 81% coverage: 15:209/241 of query aligns to 6:204/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
40% identity, 81% coverage: 15:209/241 of query aligns to 6:204/344 of 6cvlD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
40% identity, 87% coverage: 17:225/241 of query aligns to 4:215/240 of 4ymuJ
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
43% identity, 83% coverage: 21:219/241 of query aligns to 13:215/330 of P9WQK5
>WP_011906830.1 NCBI__GCF_000013325.1:WP_011906830.1
MESPDSASPAAFTGTRLNKIYRTGETEVHALRDVDLSIPQGEVLVLLGPSGSGKSTLLNI
LGGLDRPTSGNLSWFDHDLVAADEAALTRFRRAHVGFIFQFYNLIPSLTAEENVRLVTDI
AESPMPPGEALERVGLADRRNHYPAQLSGGEQQRVAVARAIAKRPAVLLCDEPTGALDSR
TGVRVLETLASANRELATTVVIITHNAGIAAMAHRVFHFLDGRIARIVRNERPVDPAGIT
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory